View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_79 (Length: 338)
Name: NF2519_low_79
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 52389091 - 52388769
Alignment:
| Q |
1 |
catgttgttttactaggccaaagtcattcatgcttttcaaactatgttaagttctattgaacaacgagctacataaagataattaggtgatttgcatcaa |
100 |
Q |
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| T |
52389091 |
catgttgttttactaggccaaagtcattcatgcttttcaaactatgttaagttctattgaacaacgagctacataaagataattaggtgatttgcatcaa |
52388992 |
T |
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| Q |
101 |
gagcaatgttgtcaaacttgagattctacttataacccagtcatgtcaagtttaaattctnnnnnnnnnnnnncagatttatttannnnnnngagaaaat |
200 |
Q |
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| T |
52388991 |
gagcaatgttgtcaaacttgagattctacttataacccagtcatgtcaagtttaaattctaaaaaataaaaaacagatctatttatttttttgagaaaat |
52388892 |
T |
|
| Q |
201 |
aagcaacagatttattaaaatacaacttaaaccccagttgcgcaaggatgggaagaatcgttccatcccaccttcaacctcgtgatcccacgtatatttc |
300 |
Q |
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| T |
52388891 |
aagcaacagatttattaaaatacaacttaaaccccagttgcgcaaggatgggaagaatcgttccatcccaccttcaacctcgtgatcccacgtatatttc |
52388792 |
T |
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| Q |
301 |
gatattccgttcctaggtattgc |
323 |
Q |
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| T |
52388791 |
gatattccgttcctaggtattgc |
52388769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 32919356 - 32919400
Alignment:
| Q |
85 |
aggtgatttgcatcaagagcaatgttgtcaaacttgagattctac |
129 |
Q |
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| T |
32919356 |
aggtgatttgcatcaagagaaatgttgtcaaactcgagattctac |
32919400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 32919966 - 32920060
Alignment:
| Q |
224 |
aacttaaaccccagttgcgcaaggatgggaagaatcgttccatcccaccttcaacctcgtgatcccacgtatatttcgatattccgttcctaggt |
318 |
Q |
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|||||||| || ||||| ||||||||||||||||| |||| ||||||||||||||| | ||||||| ||| ||| || |||| |||| ||||| |
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| T |
32919966 |
aacttaaaacctagttgtgcaaggatgggaagaattgttcggtcccaccttcaaccttgcaatcccacatatcttttgacattctgttcgtaggt |
32920060 |
T |
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