View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_84 (Length: 334)
Name: NF2519_low_84
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 19935874 - 19936154
Alignment:
| Q |
10 |
tggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcct |
109 |
Q |
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| T |
19935874 |
tggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcct |
19935973 |
T |
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| Q |
110 |
ctcaactttttcttttcttactgatgattgnnnnnnnacttgggttatatcaatgtctgtaattatttggtagtcttgttgtggacttgtgggaagaagt |
209 |
Q |
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| T |
19935974 |
ctcaactttttcttttcttactgatgattgtttttttacttgggttatatcaatgtctgtaattatttggtagtcttgttgtggacttgtgggaagaagt |
19936073 |
T |
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| Q |
210 |
aatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacagatatgtgtgc |
290 |
Q |
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| T |
19936074 |
aatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacagatatgtgtgc |
19936154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 19967013 - 19967293
Alignment:
| Q |
10 |
tggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcct |
109 |
Q |
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| T |
19967013 |
tggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcct |
19967112 |
T |
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| Q |
110 |
ctcaactttttcttttcttactgatgattgnnnnnnnacttgggttatatcaatgtctgtaattatttggtagtcttgttgtggacttgtgggaagaagt |
209 |
Q |
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| T |
19967113 |
ctcaactttttcttttcttactgatgattgtttttttacttgggttatatcaatgtctgtaattatttggtagtcttgttgtggacttgtgggaagaagt |
19967212 |
T |
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| Q |
210 |
aatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacagatatgtgtgc |
290 |
Q |
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| T |
19967213 |
aatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacagatatgtgtgc |
19967293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 19929599 - 19929870
Alignment:
| Q |
13 |
tttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcctctc |
112 |
Q |
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| T |
19929599 |
tttcaaaggcatgacctctgtttcattttgacctct-ataacatttaaattttcaaatatgtattgactttcacgtaattaattgatactagatcctctc |
19929697 |
T |
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| Q |
113 |
aactttttc-----ttttcttactgatgattgnnnnnnnacttgggttatatcaatgtctgtaattatttggtagtcttgttgtggacttgtgggaagaa |
207 |
Q |
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| T |
19929698 |
aactttttcatttattttcttattgatggtt-cttttttacttgggttatatcgatgtctgtcattttttggtagtcttgttgtggacttgtgggaaaga |
19929796 |
T |
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| Q |
208 |
gtaatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacaga |
281 |
Q |
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||||||||| ||||| ||| ||||| ||| |||| |||| |||||| | |||| |||||||| ||||||||||| |
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| T |
19929797 |
gtaatggatatcaaaatttgcaactgcattgactagtgttgtagaacgacaacctgcttttatttgaaaacaga |
19929870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 47605230 - 47604956
Alignment:
| Q |
12 |
gtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgtaactaattgatgctagatcctct |
111 |
Q |
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| T |
47605230 |
gtttcaaaggcatagcctctctttcgttttgacctct-atgtcatttagattttcaactatacattgactttcactttattaattcatgcagaaccctct |
47605132 |
T |
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| Q |
112 |
caactttttcttttc-----ttactgatgattgnnnnnnnacttgggttatatcaatgtctgtaattattt-ggtagtcttgttgtggacttgtgggaag |
205 |
Q |
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|||||||||| |||| ||| |||||||| |||||| ||||||| |||||||| ||| ||| ||||||| |||||| ||||||||||||| |
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| T |
47605131 |
caactttttcatttcctttcttattgatgatt--ttttttacttggattatatccatgtctgtcatttttttggtagtcctgttgtagacttgtgggaag |
47605034 |
T |
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| Q |
206 |
aagtaatggatgtcaaattttccaactacatagactggtgtagtagaatgccaacgtgcttttaattgaaaacagata |
283 |
Q |
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|||||||||| ||||| ||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||| |
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| T |
47605033 |
gagtaatggatatcaaaatttgcaactacatagactaaaatagtagaactccagcatgcttttaattgaaaacagata |
47604956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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