View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_88 (Length: 330)

Name: NF2519_low_88
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_88
NF2519_low_88
[»] chr4 (29 HSPs)
chr4 (108-307)||(48734899-48735098)
chr4 (147-319)||(49038411-49038577)
chr4 (136-319)||(48147235-48147412)
chr4 (184-319)||(45365784-45365919)
chr4 (184-319)||(45371638-45371773)
chr4 (26-97)||(48734784-48734855)
chr4 (253-319)||(7790442-7790508)
chr4 (145-319)||(48870922-48871096)
chr4 (145-319)||(48876226-48876400)
chr4 (267-319)||(7878745-7878797)
chr4 (267-319)||(7908664-7908716)
chr4 (267-319)||(48156076-48156128)
chr4 (136-319)||(48853043-48853226)
chr4 (145-319)||(48886608-48886782)
chr4 (133-319)||(49043681-49043867)
chr4 (133-319)||(49048068-49048254)
chr4 (267-319)||(50666677-50666729)
chr4 (272-319)||(48864397-48864444)
chr4 (253-319)||(48903317-48903383)
chr4 (267-316)||(7771760-7771809)
chr4 (271-319)||(7773476-7773524)
chr4 (267-319)||(7800999-7801051)
chr4 (267-319)||(7813839-7813891)
chr4 (184-214)||(45384454-45384484)
chr4 (267-316)||(7237390-7237439)
chr4 (267-319)||(7786826-7786878)
chr4 (275-319)||(45384547-45384591)
chr4 (271-319)||(47208239-47208287)
chr4 (152-232)||(48899189-48899269)
[»] chr8 (1 HSPs)
chr8 (123-232)||(4030291-4030400)
[»] chr3 (4 HSPs)
chr3 (131-214)||(47451411-47451494)
chr3 (267-319)||(11024150-11024202)
chr3 (272-319)||(11005580-11005627)
chr3 (267-319)||(11015138-11015190)
[»] chr5 (3 HSPs)
chr5 (272-315)||(42561985-42562028)
chr5 (277-319)||(179420-179462)
chr5 (253-319)||(9120125-9120191)
[»] chr2 (1 HSPs)
chr2 (123-204)||(29350899-29350980)
[»] chr1 (4 HSPs)
chr1 (267-315)||(24416144-24416192)
chr1 (267-312)||(24323139-24323184)
chr1 (267-315)||(24310582-24310630)
chr1 (267-315)||(24367531-24367579)
[»] chr6 (2 HSPs)
chr6 (274-314)||(14197337-14197377)
chr6 (267-319)||(21016183-21016235)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 108 - 307
Target Start/End: Original strand, 48734899 - 48735098
Alignment:
Q  108 cttcaaattcgcatgaatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgct 207  Q
    ||||||||||  | ||||||  ||||| ||||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||  |    
T  48734899 cttcaaattcagaagaataggggcgatgctctagcagctgtcctttgtcattgtacctcaccaatccagtctcctgatctgttccaataatatcaccatt 48734998  T
Q  208 ttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| |||| ||||||||| || ||||||    
T  48734999 ttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 49038411 - 49038577
Alignment:
Q  147 gtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagt 246  Q
    ||||||||||||| ||||||||||||| | | | |  ||||||||||||||||| ||| ||||||||| |||| |  |||||||||      | |||| |    
T  49038411 gtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaag------tagggaat 49038504  T
Q  247 gccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||| ||||||||||| || |||| ||||||||||| ||||| |||||||| || ||||||||||||||||||    
T  49038505 gccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttca 49038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 48147235 - 48147412
Alignment:
Q  136 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 235  Q
    |||||| |||||||||||||| |  ||||||| |||| |||| |||  || |||||||||||| ||||| ||||||||  | || |  |||||||||       
T  48147235 ctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaag--- 48147331  T
Q  236 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
       | |||| |||||| |||||||| |  | |||| ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48147332 ---tagggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 45365784 - 45365919
Alignment:
Q  184 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 283  Q
    ||||||||||||||||||||||||||||||| | || || |||||||||   |   ||||| |||||| |||||  ||| | ||||| || ||||||||     
T  45365784 atctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagac 45365883  T
Q  284 gaatgcactttgtactccttcatcacccatatttca 319  Q
    ||| ||||||| || || ||||||||||||||||||    
T  45365884 gaacgcactttatattctttcatcacccatatttca 45365919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 45371638 - 45371773
Alignment:
Q  184 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 283  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |    | |||  |||||  ||||  ||| ||  ||| |||||||||||     
T  45371638 atctgttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagac 45371737  T
Q  284 gaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||||||||| || ||||| ||||||||||||    
T  45371738 gaatgcactttgtattctttcataacccatatttca 45371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 48734784 - 48734855
Alignment:
Q  26 tataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctttcttcttaggcttgttca 97  Q
    ||||||||||||||||||| |||||||| ||||| ||| |||||||||||   |||||||||||||||||||    
T  48734784 tataaatatcaagaaaatggatggtgaaaaagaacatttcacaacctcatatcttcttcttaggcttgttca 48734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 7790508 - 7790442
Alignment:
Q  253 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||| ||| || |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  7790508 aatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttca 7790442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 48871096 - 48870922
Alignment:
Q  145 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 244  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48871096 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48870997  T
Q  245 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48870996 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48870922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 48876400 - 48876226
Alignment:
Q  145 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 244  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48876400 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48876301  T
Q  245 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48876300 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48876226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 7878797 - 7878745
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  7878797 gagttttaatccaagatgaatgcactttgtattctttcatcacccatatttca 7878745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 7908716 - 7908664
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  7908716 gagttttattccaagatgaatgcactttgtattctttcatcacccatatttca 7908664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 48156076 - 48156128
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48156076 gagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttca 48156128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 48853226 - 48853043
Alignment:
Q  136 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 235  Q
    ||||||||  ||||||| | |||| ||||||| ||||||| | |||  ||| ||||||||||||||||| || |||||| |||| | ||||||||||       
T  48853226 ctctagcaaatgtccttcgccatcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtag 48853127  T
Q  236 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |   ||||| ||  | ||| ||| ||| || |||| ||||||||||| ||| |||||||||| || ||||| ||||||||||||    
T  48853126 tgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttca 48853043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 48886782 - 48886608
Alignment:
Q  145 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 244  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| |  | |    
T  48886782 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaa 48886683  T
Q  245 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48886682 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48886608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 319
Target Start/End: Original strand, 49043681 - 49043867
Alignment:
Q  133 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 232  Q
    ||||||||| | ||||||||| ||||| ||||||| |||||||   |||  ||| |||||||||||||||||  |||||||| |||| | ||| |  |||    
T  49043681 atactctagaaactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattggagcgaag 49043780  T
Q  233 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
       |   ||||| || ||| |||||| | | || |||| |||||||| || |||||||||||||| || ||||||||||||||||||    
T  49043781 taatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttca 49043867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 319
Target Start/End: Original strand, 49048068 - 49048254
Alignment:
Q  133 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 232  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||   |||  ||| ||| ||||||||||||| |||||||||   || | ||| || |||    
T  49048068 atactctagaaactgtcctttttcatcgtacttcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaag 49048167  T
Q  233 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |  | | ||||| || ||| | |||| | | ||  ||| |||||||| || ||||||||||| ||||| ||||||||||||||||||    
T  49048168 caatgggtgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttca 49048254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 50666729 - 50666677
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  50666729 gagttttagtccaagatgaatgcactttgtattcttacatcacccataattca 50666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 48864444 - 48864397
Alignment:
Q  272 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48864444 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 48903383 - 48903317
Alignment:
Q  253 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||||| ||  | |||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  48903383 aatagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttca 48903317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 7771809 - 7771760
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 316  Q
    ||||||||||||| || |||||||||||||| || |||||||||||||||    
T  7771809 gagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 7773476 - 7773524
Alignment:
Q  271 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||||    
T  7773476 tttaatccaagacgaatgcactttgtattctttcatcacccatatttca 7773524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 7801051 - 7800999
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7801051 gagttttattccaagacgaatgcactttgtaatctttcaacacccatatttca 7800999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 7813891 - 7813839
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7813891 gagttttattccaagacgaatgcactttgtattctttcaacacccatatttca 7813839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 45384454 - 45384484
Alignment:
Q  184 atctgttccaataatatcaccgctttttgta 214  Q
    |||||||||||||||||||||||||||||||    
T  45384454 atctgttccaataatatcaccgctttttgta 45384484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 7237390 - 7237439
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 316  Q
    |||||||||||||| | ||||||| |||||| || |||||||||||||||    
T  7237390 gagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 7786878 - 7786826
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||| ||| |||||||| ||||||| ||||| || ||||||||||||||||||    
T  7786878 gagtcttattccaagataaatgcacgttgtattctttcatcacccatatttca 7786826  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 45384547 - 45384591
Alignment:
Q  275 gtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| ||||||||||| || || ||||||||||||||||||    
T  45384547 gtccaagacgaatgcactttatattctttcatcacccatatttca 45384591  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 47208287 - 47208239
Alignment:
Q  271 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||||||||| || |||||||| || |||||||||| |||||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttca 47208239  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 48899269 - 48899189
Alignment:
Q  152 ttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 232  Q
    |||||||| ||||||| |||||||   |||  |||||||||||||||||  || ||||||||| | ||||||||| |||||    
T  48899269 ttgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaag 48899189  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 4030291 - 4030400
Alignment:
Q  123 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaa 222  Q
    ||||| |||||| |||||||| ||||||||||||||| ||||||| |||| ||||  ||  || |||||||||||||||||| ||| ||||| | ||||     
T  4030291 aatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacat 4030390  T
Q  223 tggggaaaag 232  Q
    ||||||||||    
T  4030391 tggggaaaag 4030400  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 47451411 - 47451494
Alignment:
Q  131 cgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgta 214  Q
    |||| ||||| || ||||||||||||||  ||||| | |||||| || |||| ||||||||||||||||||||| |||||||||    
T  47451411 cgatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 11024150 - 11024202
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||| ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11024150 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttca 11024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 11005580 - 11005627
Alignment:
Q  272 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11005580 ttagtccaagacgaatgcactttgtattctttcataacccatatttca 11005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 11015138 - 11015190
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||  |||||| |||||||||||||| || ||||| ||||||||||||    
T  11015138 gagttttaacccaagacgaatgcactttgtattctttcataacccatatttca 11015190  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 42561985 - 42562028
Alignment:
Q  272 ttagtccaagatgaatgcactttgtactccttcatcacccatat 315  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  42561985 ttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 179462 - 179420
Alignment:
Q  277 ccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttca 179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 9120191 - 9120125
Alignment:
Q  253 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||||||| | || |||||||  ||||||| |||||||||||||| || ||||||||||||||||||    
T  9120191 aatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttca 9120125  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 29350980 - 29350899
Alignment:
Q  123 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcacc 204  Q
    ||||| |||||| |||||||| ||||||||||||||  ||||||| |||| ||||  ||  ||| |||||||||||||||||    
T  29350980 aatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacc 29350899  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 24416192 - 24416144
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 315  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||||||    
T  24416192 gagttttagtccaagatgactgccctttgtattctttcatcacccatat 24416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 24323184 - 24323139
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcaccca 312  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||    
T  24323184 gagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 24310630 - 24310582
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 315  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  24310630 gagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 24367579 - 24367531
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 315  Q
    |||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  24367579 gagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  274 agtccaagatgaatgcactttgtactccttcatcacccata 314  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 21016235 - 21016183
Alignment:
Q  267 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 319  Q
    |||| ||||||||||| ||||| |||||||| || ||||| ||||||||||||    
T  21016235 gagtcttagtccaagacgaatgtactttgtattctttcataacccatatttca 21016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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