View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_91 (Length: 322)
Name: NF2519_low_91
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_91 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 26 - 304
Target Start/End: Original strand, 1883766 - 1884046
Alignment:
| Q |
26 |
ataatactaactaattaacaaaatgtttgagatattatgccaacaccatcatga-------gtaacatgactaataacaatataatagtaagcaagtctt |
118 |
Q |
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| T |
1883766 |
ataatactaactaattaacaaaatgtttgatatattatgccaacaccatcatgactcatgagtaacatgactaaaaacaatataatagtaagcaagtgt- |
1883864 |
T |
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| Q |
119 |
tgatatatattaatttaagacaatcagctttaacttttattttggtttttgattaaacaattgtccaactcagaacatcatcaaaagcatctaacaacat |
218 |
Q |
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| T |
1883865 |
-gatatatattaatttaagacaatgagctttaacttttattttggtttt-gattata--atggtccaactcaaaacctcatcaaaagcatctaacaacat |
1883960 |
T |
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| Q |
219 |
tctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaaaatgacaagaaaatggtccttttac |
304 |
Q |
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| T |
1883961 |
tctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatagaaagatgacaagaaaacggtccttttac |
1884046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 1877947 - 1878034
Alignment:
| Q |
217 |
attctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaaaatgacaagaaaatggtccttttac |
304 |
Q |
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| T |
1877947 |
attctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttac |
1878034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 1877844 - 1877892
Alignment:
| Q |
128 |
ttaatttaagacaatcagcttt-aacttttattttggtttttgattaaa |
175 |
Q |
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| T |
1877844 |
ttaatttaagacaaccagcttttaactttcattttggtttttgattaaa |
1877892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 1890602 - 1890690
Alignment:
| Q |
217 |
attctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaaa-atgacaagaaaatggtccttttac |
304 |
Q |
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| T |
1890602 |
attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgagaagaagatggtccttttac |
1890690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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