View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_94 (Length: 317)

Name: NF2519_low_94
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_94
NF2519_low_94
[»] chr8 (8 HSPs)
chr8 (1-317)||(28252235-28252562)
chr8 (261-317)||(16052402-16052458)
chr8 (261-317)||(24120165-24120221)
chr8 (273-311)||(11310341-11310379)
chr8 (261-317)||(22894659-22894715)
chr8 (261-317)||(6358632-6358688)
chr8 (261-309)||(12956431-12956479)
chr8 (261-309)||(14977232-14977280)
[»] chr6 (4 HSPs)
chr6 (261-317)||(30355260-30355316)
chr6 (271-317)||(12974272-12974318)
chr6 (271-317)||(15576297-15576343)
chr6 (271-311)||(16527836-16527876)
[»] chr2 (5 HSPs)
chr2 (261-317)||(21505264-21505320)
chr2 (277-317)||(18236443-18236483)
chr2 (261-317)||(28278548-28278603)
chr2 (261-307)||(32619586-32619632)
chr2 (271-307)||(19949690-19949725)
[»] chr4 (5 HSPs)
chr4 (261-316)||(12111455-12111510)
chr4 (261-317)||(5906845-5906902)
chr4 (261-317)||(15192137-15192193)
chr4 (271-311)||(10320354-10320394)
chr4 (271-303)||(34864426-34864458)
[»] chr5 (7 HSPs)
chr5 (261-311)||(17382160-17382210)
chr5 (259-312)||(17027466-17027519)
chr5 (261-317)||(24841687-24841743)
chr5 (261-317)||(25594817-25594873)
chr5 (259-317)||(11274454-11274511)
chr5 (271-317)||(22967977-22968023)
chr5 (261-305)||(30790727-30790771)
[»] chr1 (5 HSPs)
chr1 (261-317)||(23223345-23223401)
chr1 (261-317)||(25777956-25778012)
chr1 (271-317)||(30675417-30675463)
chr1 (271-317)||(12424050-12424095)
chr1 (261-317)||(25730696-25730752)
[»] scaffold0002 (1 HSPs)
scaffold0002 (271-317)||(446939-446984)
[»] chr7 (8 HSPs)
chr7 (261-317)||(29544453-29544509)
chr7 (259-317)||(7142032-7142090)
chr7 (268-317)||(20470942-20470991)
chr7 (268-317)||(22532775-22532824)
chr7 (272-317)||(23124835-23124880)
chr7 (277-317)||(2353381-2353421)
chr7 (261-317)||(18496499-18496555)
chr7 (271-307)||(21545933-21545969)
[»] chr3 (3 HSPs)
chr3 (155-218)||(26892085-26892148)
chr3 (271-317)||(13911199-13911245)
chr3 (271-317)||(17637037-17637083)
[»] scaffold0386 (2 HSPs)
scaffold0386 (268-317)||(8841-8890)
scaffold0386 (268-304)||(13203-13239)
[»] scaffold0188 (1 HSPs)
scaffold0188 (261-310)||(27079-27128)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 28252235 - 28252562
Alignment:
Q  1 aacatctcaatacat-tctctctctttttatgttgatgatttgatgatatactacaaagaagaaagctcaggtttgaattctcttaaggatttattcaac 99  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28252235 aacatctgaatacatctctctctctttttatgttgatgatttgattatatactacaaagaagaaagctcaggtttgaattctcttaaggatttattcaac 28252334  T
Q  100 atatatgctatgaaaaatagctataatttctttgaagaagatatgtagacttgttgatcaaggttgtctcaacatgagatctttaattagtctcaacaat 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||||||||    
T  28252335 atatatgctatgaaaaattgctataatttctttgaagaagatatgtagacttgttgataaaggttgtctcaacatcagatctctaattaggctcaacaat 28252434  T
Q  200 gcaagtaatttgaagttatcatgaaatattctgcattgacatctcttctaactctcatc----------ttaaatgcgaataaaagtactaaaaacatag 289  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          |||||| |||||||||||| ||||||||||     
T  28252435 gcaagtaatttgaagttatcatggaatattctgcattgacatctcttctaactctcatcttatttgtctttaaatacgaataaaagtattaaaaacataa 28252534  T
Q  290 caaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||||||||||| ||||    
T  28252535 caaaaaatatcatatgatgctccttcat 28252562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 16052402 - 16052458
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16052402 aaatgcaaataaaagtactaaaaacatagccaaaaatatcatatgatgctccgtcat 16052458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 24120221 - 24120165
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| | ||||||    
T  24120221 aaatgcaaagaaaagtactaaaaacatagcaaaaaatatcatatgatgattcgtcat 24120165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 11310341 - 11310379
Alignment:
Q  273 aagtactaaaaacatagcaaaaaatatcatatgatgctc 311  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11310341 aagtactaaaaacatagcaaaaaatatcatatgatgctc 11310379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 22894659 - 22894715
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||| |||||||||||||||||| | |||||| ||||||||||||| |||||    
T  22894659 aaatgcgaagaaaagtactaaaaacatacctaaaaatgtcatatgatgctctgtcat 22894715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 6358688 - 6358632
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| |||||||||||||||||||||||  ||||| ||||||  ||||| |||||    
T  6358688 aaatgcaaataaaagtactaaaaacatagcccaaaatgtcatatagtgctctgtcat 6358632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 12956479 - 12956431
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgc 309  Q
    |||||| || |||||||||||||||||||  |||||||||| |||||||    
T  12956479 aaatgcaaagaaaagtactaaaaacatagacaaaaatatcacatgatgc 12956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 14977232 - 14977280
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgc 309  Q
    |||||| || |||||| ||||||||||||  ||||||||||||||||||    
T  14977232 aaatgcaaagaaaagtgctaaaaacatagttaaaaatatcatatgatgc 14977280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 30355316 - 30355260
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30355316 aaatgcaagtaaaagtactaaaaacatagccaaaaatatcatatgatgctccgtcat 30355260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 12974318 - 12974272
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12974318 aaaagtactaaaaccatagcaaaaaatatcatatgatgctccgtcat 12974272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 15576297 - 15576343
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15576297 aaaagtactaaaaacatagccaaaaatatcatatgatgctccatcat 15576343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 16527876 - 16527836
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctc 311  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  16527876 aaaagtactaaaaacatagccaaaaatattatatgatgctc 16527836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 21505264 - 21505320
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21505264 aaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctccgtcat 21505320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 18236443 - 18236483
Alignment:
Q  277 actaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18236443 actaaaaacatagcataaaatatcatatgatgctccgtcat 18236483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 28278548 - 28278603
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  28278548 aaatgcaaagaaaagtactaaaa-catagcaaaaaatatcatatgatgctctgtcat 28278603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 32619632 - 32619586
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgat 307  Q
    |||||| || |||||||||||||| ||||| ||||||||||||||||    
T  32619632 aaatgcaaagaaaagtactaaaaatatagccaaaaatatcatatgat 32619586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 19949690 - 19949725
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgat 307  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19949690 aaaagtactaaaaacatag-aaaaaatatcatatgat 19949725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 12111455 - 12111510
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtca 316  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  12111455 aaatgcaaataaaagtactaaaaacataacaaaaaatgtcatatgatgctctgtca 12111510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 5906845 - 5906902
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaa-atatcatatgatgctccgtcat 317  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  5906845 aaatgcaaataaaagtactaaaaacatagcaaaaatatatcatatgatgtttcgtcat 5906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 15192193 - 15192137
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || |||||||| ||||||||| |||||||| ||||||||||||| |||||    
T  15192193 aaatgcaaagaaaagtacgaaaaacataacaaaaaatgtcatatgatgctctgtcat 15192137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 10320354 - 10320394
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctc 311  Q
    |||| ||||||||||||||| |||||| |||||||||||||    
T  10320354 aaaattactaaaaacatagcgaaaaatgtcatatgatgctc 10320394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 34864426 - 34864458
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcata 303  Q
    |||||||||||||||||| ||||||||||||||    
T  34864426 aaaagtactaaaaacataacaaaaaatatcata 34864458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 17382160 - 17382210
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctc 311  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  17382160 aaatgcaaaaaaaagtactaaacacatagcaaaaaatatcatatgatgctc 17382210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 17027519 - 17027466
Alignment:
Q  259 ttaaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctcc 312  Q
    |||||||| || |||||||||||||||||||| |||||| ||||||||||||||    
T  17027519 ttaaatgcaaagaaaagtactaaaaacatagccaaaaatgtcatatgatgctcc 17027466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 24841743 - 24841687
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || || |||||||||||||||||||||||| ||||||||||||| |||||    
T  24841743 aaatgcaaagaatagtactaaaaacatagcaaaaaatgtcatatgatgctctgtcat 24841687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 25594817 - 25594873
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  25594817 aaatgcaaataaaagtactaaaaacatagccaaaaataatatatgatgctctgtcat 25594873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 11274454 - 11274511
Alignment:
Q  259 ttaaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||    
T  11274454 ttaaatgcaaagaaaagtactaaaaa-atagcaaaaaatatcaaatgatgctccttcat 11274511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 22967977 - 22968023
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||| |||||||||||||||  ||||||||||||||| |||||||||    
T  22967977 aaaactactaaaaacatagcctaaaatatcatatgatactccgtcat 22968023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 30790771 - 30790727
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatg 305  Q
    |||||| |||||||  ||||||||||||||||||||||| |||||    
T  30790771 aaatgcaaataaaataactaaaaacatagcaaaaaatattatatg 30790727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 23223401 - 23223345
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || ||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  23223401 aaatgcaaagaaaagtacttaaaacatagccaaaaacatcatatgatgctccgtcat 23223345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 25777956 - 25778012
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || ||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  25777956 aaatgcaaagaaaagcactaagaacatagcaaaaaatatcatatgatactccgtcat 25778012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 30675463 - 30675417
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||    
T  30675463 aaaagttctaaaaacatagcaaaaaatgtcatatgatgctctgtcat 30675417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 12424050 - 12424095
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||    
T  12424050 aaaagtactaaaaacatagc-caaaatatcatatgatgctctgtcat 12424095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 25730696 - 25730752
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaa-aatatcatatgatgctccgtcat 317  Q
    |||||| || ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  25730696 aaatgcaaagaaaagtactaaaa-catagcaaaaaaatatcatatgatgctctgtcat 25730752  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 446984 - 446939
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  446984 aaaagtactaaaaacatagca-aaaatatcatatgatgctctgtcat 446939  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 29544509 - 29544453
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || |||| || |||||||||||| ||||||||||||||||||||| ||||    
T  29544509 aaatgcaaagaaaattaataaaaacatagccaaaaatatcatatgatgctccttcat 29544453  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 7142090 - 7142032
Alignment:
Q  259 ttaaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||||| || |||| || |||||||||||| |||||| ||||||||||||| |||||    
T  7142090 ttaaatgcaaagaaaactattaaaaacatagccaaaaatgtcatatgatgctctgtcat 7142032  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 20470942 - 20470991
Alignment:
Q  268 aataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||||||| ||| |||||  |||||||||||| ||||||    
T  20470942 aataaaagtactaaaaacaaagccaaaaaattcatatgatgcttcgtcat 20470991  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 22532775 - 22532824
Alignment:
Q  268 aataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||||  ||||||||||||||  |||||||||||||||||||| ||||    
T  22532775 aataaaataactaaaaacatagcctaaaatatcatatgatgctccatcat 22532824  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 23124880 - 23124835
Alignment:
Q  272 aaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||    
T  23124880 aaagtactaaaaacatagtaaaaaatgtcagatgatgctccatcat 23124835  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 2353381 - 2353421
Alignment:
Q  277 actaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  2353381 actaaaaacatagcctaaaatatcatacgatgctccgtcat 2353421  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 18496555 - 18496499
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||||| || |||| |||||||||||||||  ||||||||||||| |||||| ||||    
T  18496555 aaatgcaaagaaaactactaaaaacatagcctaaaatatcatatggtgctccatcat 18496499  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 21545933 - 21545969
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgat 307  Q
    |||||||||||||||||||  ||||||||||||||||    
T  21545933 aaaagtactaaaaacatagtcaaaaatatcatatgat 21545969  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 26892085 - 26892148
Alignment:
Q  155 gatcaaggttgtctcaacatgagatctttaattagtctcaacaatgcaagtaatttgaagttat 218  Q
    ||||||||| | |||||||| | ||||||||||||| ||| |||||||| ||||||||| ||||    
T  26892085 gatcaaggtggcctcaacatcaaatctttaattagtgtcagcaatgcaaataatttgaaattat 26892148  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 13911245 - 13911199
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    |||| |||||||||||||| |||||||||||| |||| |||||||||    
T  13911245 aaaattactaaaaacatagaaaaaaatatcatttgattctccgtcat 13911199  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 17637083 - 17637037
Alignment:
Q  271 aaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||| || ||||||||| |||||| |||||||||||||||||||    
T  17637083 aaaagtaatataaacatagccaaaaatgtcatatgatgctccgtcat 17637037  T

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Target: scaffold0386 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 8841 - 8890
Alignment:
Q  268 aataaaagtactaaaaacatagcaaaaaatatcatatgatgctccgtcat 317  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||| ||||    
T  8841 aataaaagtactaaaaaaataaccaaaaatatcatatgatgttccatcat 8890  T

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Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 13203 - 13239
Alignment:
Q  268 aataaaagtactaaaaacatagcaaaaaatatcatat 304  Q
    ||||||||||||||||||||| | |||||||||||||    
T  13203 aataaaagtactaaaaacataactaaaaatatcatat 13239  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 27079 - 27128
Alignment:
Q  261 aaatgcgaataaaagtactaaaaacatagcaaaaaatatcatatgatgct 310  Q
    |||||| || ||||||||||||||||||||  |||||||||| |||||||    
T  27079 aaatgcaaagaaaagtactaaaaacatagccgaaaatatcatgtgatgct 27128  T

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