View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_98 (Length: 309)
Name: NF2519_low_98
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 6954712 - 6954416
Alignment:
| Q |
1 |
aacacaccctttatgtaacaaaaggaaaaaagtacaccctttttattcactatattggtttcttgattaagccaatagaaacagttttcaataactcaat |
100 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954712 |
aacacaccctttatttaaaaaaaggaaaaaagtacaccctttttattcactatgttggtttcttgattaagccaatagaaacagttttcaataactcaat |
6954613 |
T |
|
| Q |
101 |
ccccaccagtaagatttgctcaaaaaggaacatataaaaaattaatgcaatttgtttaatttggtatgactcaatagtttttgataagtggcgatggact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6954612 |
ccccaccagtaagatttgctcaaaaaggaacatataaaaaattaatgcaatttgtttaatttggtatgactcaatagtttttgataaggggcgatggact |
6954513 |
T |
|
| Q |
201 |
aatcttgtaaattgaaccgtagtatctaaacataagttataatctgaaaatcctatgctttaataatagaaactcgtaatcaaatcttgtgcatttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6954512 |
aatcttgtaaattgaaccgtagtatctaaacataagttataatctgaaaatcctatgctttaataatagaaactcgtaatcaaatcttgtgcgtttt |
6954416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6964427 - 6964308
Alignment:
| Q |
1 |
aacacaccctttatgtaacaaaaggaaaaaagtacaccctttttattcactatattggtttcttgattaagccaatagaaacagttttcaataactcaat |
100 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||| ||||||| |
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| T |
6964427 |
aacacaccctttatttaaaaaaaggaaaaaagtacaccctttttattcaatatgttggtttcttgattaagtcaatagaaacagaattgaatcactcaat |
6964328 |
T |
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| Q |
101 |
ccccaccagtaagatttgct |
120 |
Q |
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| T |
6964327 |
ccccaccagtaagatttgct |
6964308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 4999957 - 4999917
Alignment:
| Q |
198 |
actaatcttgtaaattgaaccgtagtatctaaacataagtt |
238 |
Q |
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| T |
4999957 |
actaatcttgtaaattggaccgtagtatttaaatataagtt |
4999917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 10842682 - 10842618
Alignment:
| Q |
208 |
taaattgaaccgtagtatctaaacataagttataatctgaaaatcctatgctttaataatagaaa |
272 |
Q |
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||||||| |||||||||| |||||| || || |||| || |||||||| |||| ||||||||||| |
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| T |
10842682 |
taaattggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataatagaaa |
10842618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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