View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_99 (Length: 309)
Name: NF2519_low_99
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 36454107 - 36453815
Alignment:
| Q |
1 |
acaattatcaaccaacaaactagaaatttaaaataataaaaagttcgtcgttgacaagatcggtcctgccatctcgagtctattatgatgcgaataatag |
100 |
Q |
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| T |
36454107 |
acaattatcaaccaacaaactagaaatttaaaatcataaaaagttcgtcgttgacaagatcggtcctgccatctcgagtctattatgatgcgaaaaataa |
36454008 |
T |
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| Q |
101 |
ttaataatgtatgtcaatgtgattcaaaagattcttcattccaatannnnnnngtattattagttcctaaagtaagttaaaaatttgaaggaataagtct |
200 |
Q |
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| T |
36454007 |
ttaataatgtatgtcaatgtgattcaaaagattcttcattccaatatttttttgtattattagttcctaaagtaagttaaaaatttgaaggaataagtct |
36453908 |
T |
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| Q |
201 |
ttcacatttctagaacatatataagatgatattttagaatcaatacaccgatcatatattatggatcatttacatatttaataactttgtttt |
293 |
Q |
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| T |
36453907 |
ttcacatttctagaacgtatataagatgatattttagaatcaatacaccgatcatatattatggatcatttacatatttaataactttgtttt |
36453815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 18901566 - 18901514
Alignment:
| Q |
196 |
agtctttcacatttctagaacatatataagatgatattttagaatcaatacac |
248 |
Q |
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| T |
18901566 |
agtctctcacatttatagaatgtatataagatgatatttgtgaatcaatacac |
18901514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 25148529 - 25148601
Alignment:
| Q |
157 |
ttattagttcctaaagtaagttaaaaatttgaaggaataagtctttcacatttctagaacatatataagatga |
229 |
Q |
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||||||||||| |||| ||||| | ||||||||||||| | |||| ||||| ||||||| ||||| |||||| |
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| T |
25148529 |
ttattagttcccaaaggaagttgacaatttgaaggaatgattcttagacattgctagaacttatattagatga |
25148601 |
T |
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