View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_high_10 (Length: 337)
Name: NF2520_high_10
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 47846044 - 47846373
Alignment:
| Q |
1 |
ccacttaacttttgtggataataattattattactactagatgttgttgtttcagtgaaacttccttgtccttgtaccaattctggtcctgctactccct |
100 |
Q |
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| T |
47846044 |
ccacttaacttttgtggataataattattattactactagatgttgttgtttcagtgaaacttccttgtccttgtaccaattcttgtcctgctactccct |
47846143 |
T |
|
| Q |
101 |
caacacaatattggttagtttgagtttgtgagaaatattgcaagatttggttgttgttaatagagttgatgcaacctgcagaaatataatttgcttgttg |
200 |
Q |
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| T |
47846144 |
caacacaatattggttagtttgagtttgtgagaaatattgcaagatttggttgttgttaatagagttgatgcaac---cagaaatataatttgcttgttg |
47846240 |
T |
|
| Q |
201 |
ttcttcatgaacttgttgtcttgaaagaacaccaccatcatgtaatggataataatcaccatcttcattagagaatctcccaccaagcttgattagaaat |
300 |
Q |
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| T |
47846241 |
ttcttcatgaacttgttgtcttgaaagaacaccaccatcatgtaatggataataatcatcatcttcattagagaatctcccaccaagcttgattagaaat |
47846340 |
T |
|
| Q |
301 |
tttctaatagaatcttgatcgttgaaactagaa |
333 |
Q |
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| T |
47846341 |
tttctaatagaatcttgatcgttgaaactagaa |
47846373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 4686453 - 4686401
Alignment:
| Q |
274 |
aatctcccaccaagcttgattagaaattttctaatagaatcttgatcgttgaa |
326 |
Q |
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||||| || |||||||| || |||| ||||||||||||||||||||| ||||| |
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| T |
4686453 |
aatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaa |
4686401 |
T |
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