View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_high_18 (Length: 241)
Name: NF2520_high_18
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14598200 - 14597974
Alignment:
| Q |
1 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
100 |
Q |
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| T |
14598200 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
14598101 |
T |
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| Q |
101 |
cttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatat--tatacctaagaataaattcaatcctgaactttaac |
198 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
14598100 |
cttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatcctgaactttaac |
14598001 |
T |
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| Q |
199 |
ttatgtttcacatatatatcataattt |
225 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
14598000 |
ttatgtttcacatatatttcataattt |
14597974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 14610276 - 14610456
Alignment:
| Q |
1 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
100 |
Q |
| |
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||||| || ||||||| ||||||||| |||| ||||| | || ||| ||||||| || |||||||||||||||||||||||||| || || |||| || |
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| T |
14610276 |
aagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctggtacgtgggctt |
14610375 |
T |
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| Q |
101 |
cttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatacctaagaataaatt |
181 |
Q |
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|||||||||| ||||||||||||||||||||| | |||||||||||||||||| || | ||||||| ||||||||||||| |
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| T |
14610376 |
cttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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