View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_high_4 (Length: 484)
Name: NF2520_high_4
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 333 - 470
Target Start/End: Complemental strand, 4786052 - 4785915
Alignment:
| Q |
333 |
cagaactacttacgtatgaataatgatgaaagtcttggggtgcataaagacagacactaataggctgcttagcaactgcacaaaatagtccttgttctga |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4786052 |
cagaactacttacgtatgaataatgatgaaagtcttggggtgcataaagacagacactaataggctgcttagcaactgcacaaaatagtccttgttctga |
4785953 |
T |
|
| Q |
433 |
ttgctccacatgataatatgtatcaatgctactaaatg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4785952 |
ttgctccacatgataatatgtatcaatgctactaaatg |
4785915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 4786361 - 4786158
Alignment:
| Q |
22 |
atattgcataggttaagaaaactacaaatggtnnnnnnntaa-tattgaaaacgatagttatttattacaaaattatgtatttaacataaa-ttgtacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4786361 |
atattgcataggttaagaaaactacaaatggtaaaaaaaaaaatattgaaaacgatagttatttattacaaaattatgtatttaacataaaattgtacaa |
4786262 |
T |
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| Q |
120 |
attttaagataaatttccgatttttgacttcttcttaatgtttttaatctatgttcaaatcagagacnnnnnnnacttatacaaatcaaaggctaaagta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
4786261 |
attttaagataaatttccgatttttgacttcttcttaatgtttttaatctatgttcaaatcagagactttttttactcatacaaatcaaaggctaaagta |
4786162 |
T |
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| Q |
220 |
tgcg |
223 |
Q |
| |
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|||| |
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| T |
4786161 |
tgcg |
4786158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 334 - 467
Target Start/End: Complemental strand, 4782152 - 4782019
Alignment:
| Q |
334 |
agaactacttacgtatgaataatgatgaaagtcttggggtgcataaagacagacactaataggctgcttagcaactgcacaaaatagtccttgttctgat |
433 |
Q |
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|||| |||||||| |||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||||| |
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| T |
4782152 |
agaattacttacggatgagtagtgatgaaagtcttggggtgcataaagacacacactaacaggctgcttagcaactgcacacaatagtccctggtctgat |
4782053 |
T |
|
| Q |
434 |
tgctccacatgataatatgtatcaatgctactaa |
467 |
Q |
| |
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||||||||||||| |||||||| ||||||||||| |
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| T |
4782052 |
tgctccacatgatgatatgtattaatgctactaa |
4782019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 2547005 - 2547057
Alignment:
| Q |
68 |
gaaaacgatagttatttattacaaaattatgtatttaacataaattgtacaaa |
120 |
Q |
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|||||| ||| ||||||||||||||||||| ||| ||| ||||| |||||||| |
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| T |
2547005 |
gaaaacaataattatttattacaaaattatatatgtaatataaagtgtacaaa |
2547057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 18247808 - 18247752
Alignment:
| Q |
79 |
ttatttattacaaaattatgtatttaacataaattgtacaaattttaagataaattt |
135 |
Q |
| |
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|||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||| |
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| T |
18247808 |
ttatttattataaaattatgtatttaatataaaatgtataaattttaagataaattt |
18247752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 55020487 - 55020436
Alignment:
| Q |
81 |
atttattacaaaattatgtatttaacataaattgtacaaattttaagataaa |
132 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||| ||||||||||||||| |
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| T |
55020487 |
atttattacaaaattatgtttttaatataaaatgtataaattttaagataaa |
55020436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 33288281 - 33288337
Alignment:
| Q |
79 |
ttatttattacaaaattatgtatttaacataaattgtacaaattttaagataaattt |
135 |
Q |
| |
|
|||||| ||| |||||||||||||||| | ||| ||||||| |||||| |||||||| |
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| T |
33288281 |
ttatttgttaaaaaattatgtatttaatacaaaatgtacaagttttaatataaattt |
33288337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 26977957 - 26977886
Alignment:
| Q |
79 |
ttatttattacaaaattatgtattt-aacataaattgtacaaattttaagataaatttccgatttttgactt |
149 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| ||||||| ||| |||| |||||| | ||||||||||| |
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| T |
26977957 |
ttatttattataaaattatgtatttaaatataaagtgtacaagtttgaagaaaaatttactatttttgactt |
26977886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 48517598 - 48517527
Alignment:
| Q |
64 |
tattgaaaacgatagttatttattacaaaattatgtatttaacataaattgtacaaattttaagataaattt |
135 |
Q |
| |
|
|||| ||||| ||| |||||||||| |||||||| ||||||| ||||| |||| || ||| ||||||||||| |
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| T |
48517598 |
tatttaaaacaataattatttattataaaattatatatttaatataaaatgtataagtttgaagataaattt |
48517527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 9602436 - 9602489
Alignment:
| Q |
96 |
atgtatttaacataaattgtacaaattttaagataaatttccgatttttgactt |
149 |
Q |
| |
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||||||| || ||||| ||||||| ||||||||||||||| | ||||||||||| |
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| T |
9602436 |
atgtattcaatataaaatgtacaagttttaagataaatttgctatttttgactt |
9602489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 38972361 - 38972272
Alignment:
| Q |
63 |
atattgaaaacgatagttatttattacaaaattatgtatttaacataaattgtacaaattttaagataaatttccgatttttgacttctt |
152 |
Q |
| |
|
||||||||||| | | ||||||||| ||| |||||||||||||||||| || |||| || |||||||| || |||||||||||||| |
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| T |
38972361 |
atattgaaaacaacaattatttattgcaattttatgtatttaacataaagtgcacaagcttcaagataaacttgttatttttgacttctt |
38972272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 24160624 - 24160680
Alignment:
| Q |
79 |
ttatttattacaaaattatgtatttaacataaattgtacaaattttaagataaattt |
135 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || | || ||||| ||||||||| |
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|
| T |
24160624 |
ttatttattacaaaattatgtattcaatataaagtgcataagttttatgataaattt |
24160680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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