View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2520_high_5 (Length: 462)

Name: NF2520_high_5
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2520_high_5
NF2520_high_5
[»] chr8 (14 HSPs)
chr8 (15-240)||(9031106-9031331)
chr8 (254-446)||(32305814-32306008)
chr8 (267-446)||(35634697-35634878)
chr8 (254-446)||(8669839-8670033)
chr8 (267-441)||(29226386-29226562)
chr8 (254-446)||(13882191-13882384)
chr8 (267-446)||(8106999-8107180)
chr8 (254-428)||(42570028-42570204)
chr8 (254-446)||(37533872-37534067)
chr8 (254-355)||(45177496-45177598)
chr8 (276-428)||(36741610-36741762)
chr8 (278-343)||(27420124-27420190)
chr8 (267-343)||(42450369-42450446)
chr8 (288-421)||(17855481-17855614)
[»] chr7 (10 HSPs)
chr7 (254-446)||(23319869-23320063)
chr7 (254-446)||(48394055-48394248)
chr7 (254-442)||(41850907-41851098)
chr7 (254-446)||(7568072-7568266)
chr7 (254-446)||(18674609-18674803)
chr7 (269-446)||(24989819-24989998)
chr7 (254-446)||(48390213-48390407)
chr7 (254-447)||(45062560-45062755)
chr7 (378-446)||(8417764-8417834)
chr7 (269-355)||(8417896-8417982)
[»] chr1 (22 HSPs)
chr1 (254-446)||(40987961-40988154)
chr1 (254-446)||(27654712-27654904)
chr1 (254-444)||(34546757-34546949)
chr1 (254-446)||(16130405-16130601)
chr1 (254-446)||(16129851-16130051)
chr1 (270-442)||(27846445-27846620)
chr1 (254-446)||(5800331-5800524)
chr1 (268-440)||(45192481-45192654)
chr1 (254-446)||(4813646-4813839)
chr1 (267-446)||(35050211-35050392)
chr1 (289-442)||(36834345-36834495)
chr1 (310-446)||(1553822-1553960)
chr1 (279-446)||(23933236-23933406)
chr1 (254-427)||(30222819-30222992)
chr1 (269-428)||(35428426-35428589)
chr1 (254-345)||(35121356-35121446)
chr1 (363-446)||(9411834-9411919)
chr1 (321-442)||(27332899-27333022)
chr1 (254-327)||(9412283-9412356)
chr1 (259-439)||(11907991-11908172)
chr1 (378-446)||(13879071-13879141)
chr1 (366-427)||(38859015-38859075)
[»] chr6 (3 HSPs)
chr6 (267-446)||(7243322-7243503)
chr6 (254-446)||(1365751-1365945)
chr6 (254-446)||(24337909-24338099)
[»] chr2 (18 HSPs)
chr2 (254-446)||(19926680-19926872)
chr2 (254-446)||(7105659-7105853)
chr2 (254-446)||(25187044-25187238)
chr2 (254-446)||(39778543-39778739)
chr2 (267-444)||(10728199-10728378)
chr2 (269-446)||(10700132-10700311)
chr2 (254-446)||(28831064-28831257)
chr2 (254-446)||(21344974-21345166)
chr2 (254-446)||(42993698-42993893)
chr2 (254-446)||(41435502-41435696)
chr2 (267-428)||(13693436-13693597)
chr2 (267-446)||(36191481-36191662)
chr2 (254-446)||(11964256-11964436)
chr2 (310-446)||(10448824-10448962)
chr2 (254-355)||(41462832-41462933)
chr2 (254-343)||(22066291-22066380)
chr2 (369-446)||(22066384-22066463)
chr2 (363-442)||(16621977-16622056)
[»] chr3 (19 HSPs)
chr3 (269-446)||(9663814-9663991)
chr3 (254-446)||(35612911-35613106)
chr3 (254-446)||(48905527-48905721)
chr3 (254-446)||(22515745-22515941)
chr3 (254-446)||(23026177-23026373)
chr3 (254-446)||(26848053-26848247)
chr3 (254-442)||(46320544-46320734)
chr3 (254-446)||(50834113-50834306)
chr3 (254-446)||(50841547-50841740)
chr3 (254-446)||(54748096-54748290)
chr3 (254-446)||(20922666-20922861)
chr3 (269-440)||(49794876-49795038)
chr3 (254-446)||(25095895-25096074)
chr3 (367-446)||(25313470-25313551)
chr3 (254-330)||(30363802-30363878)
chr3 (257-323)||(25313559-25313625)
chr3 (254-298)||(9663769-9663813)
chr3 (276-330)||(32619589-32619643)
chr3 (371-428)||(33280330-33280387)
[»] chr4 (14 HSPs)
chr4 (268-446)||(27627859-27628038)
chr4 (254-446)||(782899-783093)
chr4 (254-446)||(30537524-30537718)
chr4 (254-446)||(36187425-36187619)
chr4 (254-446)||(43034023-43034217)
chr4 (254-446)||(26877269-26877465)
chr4 (254-446)||(3067833-3068026)
chr4 (254-355)||(25934545-25934646)
chr4 (254-355)||(22651746-22651847)
chr4 (254-446)||(50150212-50150404)
chr4 (302-446)||(33313336-33313483)
chr4 (366-446)||(25934446-25934527)
chr4 (276-343)||(29989964-29990031)
chr4 (382-428)||(29989733-29989779)
[»] chr5 (10 HSPs)
chr5 (254-446)||(40385127-40385322)
chr5 (254-442)||(24868577-24868767)
chr5 (254-446)||(33314434-33314628)
chr5 (254-446)||(3097441-3097638)
chr5 (254-446)||(41174553-41174748)
chr5 (254-355)||(21262495-21262596)
chr5 (370-428)||(21262907-21262965)
chr5 (313-400)||(4238151-4238237)
chr5 (323-446)||(4237958-4238085)
chr5 (276-330)||(18471880-18471934)
[»] scaffold0057 (2 HSPs)
scaffold0057 (276-446)||(30516-30688)
scaffold0057 (276-443)||(30741-30910)
[»] scaffold0067 (1 HSPs)
scaffold0067 (254-446)||(6809-7005)
[»] scaffold0008 (1 HSPs)
scaffold0008 (254-392)||(258218-258356)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 9031106 - 9031331
Alignment:
Q  15 actttaatcatttctatattttgctttcaaggcatgttgatgatgacattctctattgatgcagaaatattgctgccaatacttgtctctcttttatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9031106 actttaatcatttctatattttgctttcaaggcatgttgatgatgacattctctattgatgaagaaatattgctgccaatacttgtctctctttaatcaa 9031205  T
Q  115 acagtaagcttaacattttaatgcagccaatgggcgaggcaaagagctaaagcagtattgtgatttaatgtaaaaaggttcgtgttcatggtttggttca 214  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9031206 agagtaagcttaacattttaatgcagccaatgggcgaggcaaagagctaaagcagtattgtgatttaatgtaaaaaggttcgtgttcatggtttggttca 9031305  T
Q  215 agaaagacttaatgtaacatccattc 240  Q
    ||||||||||||||||||||||||||    
T  9031306 agaaagacttaatgtaacatccattc 9031331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 32306008 - 32305814
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  32306008 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagttatctt-atttaatacatctctacat 32305910  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  32305909 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 32305814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 267 - 446
Target Start/End: Original strand, 35634697 - 35634878
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||        |||    
T  35634697 cctttatacaagaaacaaaagacataaaacatcagtaccaaagaaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatcc 35634796  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||||||| ||||||||||||||||||||||  || |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  35634797 atgaataaccctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcaca 35634878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 8670033 - 8669839
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  8670033 tactacctccgatcctttataaaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacat 8669934  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |  |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  8669933 ttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcaca 8669839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 267 - 441
Target Start/End: Complemental strand, 29226562 - 29226386
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||||| |||||||||       |||     
T  29226562 cctttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaattct 29226463  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctc--tcataattaataagg 441  Q
    || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||| |||||||    
T  29226462 atcaatacccttaaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataagg 29226386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 13882384 - 13882191
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  | |||||||||||||||||| |||||||||||||  |||||  || ||||||||||||||| ||||||||||||||||| |||||||    
T  13882384 tactccctccggtcttttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 13882285  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||| ||||||||||||    
T  13882284 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttac-tttaatattctctctcataatcaataagggcaca 13882191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 267 - 446
Target Start/End: Complemental strand, 8107180 - 8106999
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||||||| |||||||||        | |    
T  8107180 cctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaattc 8107081  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| |||  ||||||||| ||||||| ||||    
T  8107080 atgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctatctcataataaataaggacaca 8106999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 428
Target Start/End: Complemental strand, 42570204 - 42570028
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||| ||||| |||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||     
T  42570204 tactccatccgatcctttatataagaaataaaagacataaaacattaggatcaaagaaatacattgaaaatagttatcttcatttaatacacctttacaa 42570105  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctc 428  Q
    ||          || ||||||| |||||||||||||||| |||||| || ||||||||||| |||||||||||||||    
T  42570104 ttaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctc 42570028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 37534067 - 37533872
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||  | |||  ||||||||| |||||||| ||||||||||||||||  |||||||    
T  37534067 tactcccttctatcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattaaaaatagtcatcttcatttaatacatttctacat 37533968  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        ||  ||||||||   ||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||| ||||||||||||    
T  37533967 ttaaaaaaaattatatgaatacatttaaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcaca 37533872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 45177496 - 45177598
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaat-acattgaaaatagttatcttcatttaatacacctctaca 352  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||  |||| |||||||||||||| ||||||||||||||||| ||||||    
T  45177496 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaacaccaagaaaataacattgaaaatagtcatcttcatttaatacacttctaca 45177595  T
Q  353 ttt 355  Q
    |||    
T  45177596 ttt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 36741610 - 36741762
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacc 375  Q
    ||||||||||||||||||| ||||| || ||| |  | |||||||||| |||||| |||||||||||| ||| || ||||       ||   || ||| |    
T  36741610 aagaaacaaaagacataaatcatcaagatcaatggcacacattgaaaacagttattttcatttaatactcctataaatttaaatttattttttggatatc 36741709  T
Q  376 cctaaattaattactctttattccaacaacttacttacttttaatattctctc 428  Q
     ||| ||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  36741710 actatattaattactcttaattccactaacttacttacttttaatattctctc 36741762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 27420190 - 27420124
Alignment:
Q  278 gaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagtta-tcttcatttaatac 343  Q
    ||||||||| |||||||| |||| |||||| |||| |||||||||||||||| | ||||||||||||    
T  27420190 gaaacaaaatacataaaatatcaagaccaatgaaaaacattgaaaatagttatttttcatttaatac 27420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 42450446 - 42450369
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagtta-tcttcatttaatac 343  Q
    ||||| || ||||||||||| ||||||| ||| | |||||| |||| |||||||||||||||| | ||||||||||||    
T  42450446 cctttttataagaaacaaaatacataaaccattaagaccaatgaaaaacattgaaaatagttatttttcatttaatac 42450369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 421
Target Start/End: Complemental strand, 17855614 - 17855481
Alignment:
Q  288 acataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaatt 387  Q
    ||||||| |||| ||| | | ||| ||||||||||||   |||  ||||||||||| ||| |||||||       ||||| |||||||||||||||||||    
T  17855614 acataaatcatccggaactaggaagtacattgaaaatgactattctcatttaatactcctatacatttacatttcttccaagaatacccctaaattaatt 17855515  T
Q  388 actctttattccaacaacttacttacttttaata 421  Q
    ||| ||   ||||  |||||| ||||||||||||    
T  17855514 actattgcctccattaacttaattacttttaata 17855481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 23319869 - 23320063
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  23319869 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaattacattgaaaatagttatcttcgtttaatacacctctacat 23319968  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  23319969 ttaaaaaatttccatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 23320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 48394055 - 48394248
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |    
T  48394055 tactccctccgatcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctactt 48394154  T
Q  354 ttnnnnnnnt-tccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    ||       | | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  48394155 ttttcttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctttcataataaataagggcaca 48394248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 254 - 442
Target Start/End: Original strand, 41850907 - 41851098
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  41850907 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaattgttatcttcatttaatacacctctacat 41851006  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataaggg 442  Q
    ||        ||  |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||| ||||||||    
T  41851007 ttaaatttttttttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataaggg 41851098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 7568072 - 7568266
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||  |||||||    
T  7568072 tactccctccggtcctttgtacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 7568171  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctc--tcataattaataagggcaca 446  Q
    ||       || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||||    
T  7568172 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcaca 7568266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 18674803 - 18674609
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||  |||||||    
T  18674803 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaatatagtcatcttcatttaatacatttctacat 18674704  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctc--ataattaataagggcaca 446  Q
    ||       || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||  ||||| ||||||||||||    
T  18674703 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcaca 18674609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 269 - 446
Target Start/End: Complemental strand, 24989998 - 24989819
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccat 368  Q
    |||||||||||||||||||||||||||||| |  |||||  ||||||||| |||||||| ||||||||||||||||| |||||||||       ||| ||    
T  24989998 tttatacaagaaacaaaagacataaaacattaataccaagaaaatacatttaaaatagtcatcttcatttaatacacttctacatttaaaaaaattctat 24989899  T
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24989898 gaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcaca 24989819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 48390213 - 48390407
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  48390213 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 48390311  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattct--ctcataattaataagggcaca 446  Q
    ||        |||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  48390312 ttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacaca 48390407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 254 - 447
Target Start/End: Complemental strand, 45062755 - 45062560
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||  | |||  |||||||||||||||||| ||||||||||||||||| | |||||    
T  45062755 tacttcctctgatcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttttacat 45062656  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcacag 447  Q
    ||       ||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| || ||||||||||    
T  45062655 ttaaaaaaattctatgaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacag 45062560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 446
Target Start/End: Complemental strand, 8417834 - 8417764
Alignment:
Q  378 taaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  8417834 taaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcaca 8417764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 8417982 - 8417896
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacattt 355  Q
    ||||||||||||||||||||||||||||||||  |||||  ||||||||| |||||| | || |||||||||||||| |||||||||    
T  8417982 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 40987961 - 40988154
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40987961 tacttcctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 40988060  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    ||        ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  40988061 ttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttacttacttttaatattctctcataataaataagggcaca 40988154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 27654904 - 27654712
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||    
T  27654904 tactccctccgatcctttatataagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatat 27654805  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    ||       |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  27654804 ttaagaaaattccattaaaacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcaca 27654712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 254 - 444
Target Start/End: Complemental strand, 34546949 - 34546757
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  34546949 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatgcacctttacat 34546850  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggca 444  Q
    ||          | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  34546849 ttaaaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctcataataaataagggca 34546757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 16130405 - 16130601
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16130405 tactccctccggtcctttatacaagaaacaaaagagataaaacatcaagatcaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 16130504  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||          ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  16130505 ttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 16130601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 16129851 - 16130051
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  16129851 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaaaatcaaggaaatacattgaaaatagttatcttcatttaatacacctttacat 16129950  T
Q  354 tt------nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcac 445  Q
    ||              ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| |||||||||||    
T  16129951 ttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcac 16130050  T
Q  446 a 446  Q
    |    
T  16130051 a 16130051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 270 - 442
Target Start/End: Complemental strand, 27846620 - 27846445
Alignment:
Q  270 ttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacattt-nnnnnnnttccat 368  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||        ||||||    
T  27846620 ttatacaagaaacaaaagacataaaacatcaggaccaaggaaatactttgaaaatagttatcttcatttaatacacttctacatttaaaaacaattccat 27846521  T
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataaggg 442  Q
    ||||| || ||||||||||||| | ||||||| |||||||||||||||||||||  ||||||||||| ||||||||    
T  27846520 gaatatccttaaattaattactatctattccaccaacttacttacttttaatattatctctcataataaataaggg 27846445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 5800331 - 5800524
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||| ||    
T  5800331 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatat 5800430  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |        || |||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| |  ||||||||||| ||||||| ||||    
T  5800431 taaaaaaaatt-catgaatacccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacaca 5800524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 440
Target Start/End: Original strand, 45192481 - 45192654
Alignment:
Q  268 ctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcca 367  Q
    ||||||||||||||||||||||||||| |||||  | |||  |||||||||||||||||| |||||||||||||| || |||||||||       |||||    
T  45192481 ctttatacaagaaacaaaagacataaa-catcaacatcaagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaattcca 45192579  T
Q  368 tgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataag 440  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||    
T  45192580 tgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtctcataattaataag 45192654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 4813646 - 4813839
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||| ||||||||||| ||||||| ||  | |||||| |||||||||| |||||||||||||||||||||||||||||| |||    
T  4813646 tactccctccggtcctttatataagaaacaaaatacataaatca--aagaccaaggaaatacattaaaaatagttatcttcatttaatacacctctccat 4813743  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||        |||||||||||||  ||||||||||||| || |||||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  4813744 ttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttacttacttttaatattccttctcataataaataagggcaca 4813839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 446
Target Start/End: Original strand, 35050211 - 35050392
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    ||||||||||||||||||||||||||||||||||  | |||  |||||||||||||||||| ||||||||||||||||| |||||||||               
T  35050211 cctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaat 35050310  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||| |||||| |||||||||||||||||||| || |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  35050311 atgtatacccttaaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacaca 35050392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 289 - 442
Target Start/End: Complemental strand, 36834495 - 36834345
Alignment:
Q  289 cataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaatta 388  Q
    ||||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||       ||| |||||||||  |||||||||||    
T  36834495 cataaaatatcaagaccaaagaaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaatttc-atgaatacc--taaattaatta 36834399  T
Q  389 ctctttattccaacaacttacttacttttaatattctctcataattaataaggg 442  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  36834398 ctctttattccaccaacttacttacttttaatattctcttataataaataaggg 36834345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 1553960 - 1553822
Alignment:
Q  310 aaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttac 409  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||       ||| || ||||||| ||||||||||||||||||||||| ||||||||    
T  1553960 aaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaattctataaatacccttaaattaattactctttattccatcaacttac 1553861  T
Q  410 ttacttttaatattc--tctcataattaataagggcaca 446  Q
    |||||||||||||||  ||||||||| ||||||||||||    
T  1553860 ttacttttaatattctctctcataatcaataagggcaca 1553822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 279 - 446
Target Start/End: Original strand, 23933236 - 23933406
Alignment:
Q  279 aaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccct 378  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||||| |||| ||| ||||||| ||||||||||||       || |||||||||||||    
T  23933236 aaacaaaagacataaatcatcaagaccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccct 23933335  T
Q  379 aaattaattactctttattccaacaacttactta-cttttaatattctctc--ataattaataagggcaca 446  Q
    ||||||||||||||| |||| | |||||| ||||  |||||||||||||||  ||||| ||||||||||||    
T  23933336 aaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcaca 23933406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 254 - 427
Target Start/End: Complemental strand, 30222992 - 30222819
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||   ||||||| || ||||||||||||||||| ||||  |||||  |||||||||||||||||| |||||||||||||| || |||||||    
T  30222992 tactccctccggttctttatataaaaaacaaaagacataaaatatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacat 30222893  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctct 427  Q
    ||        |  ||||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  30222892 ttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaacttacttacttttaatattctct 30222819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 35428589 - 35428426
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccat 368  Q
    |||||| |||||||||||||||||||||||||  | |||  |||||||||||||||||| |||||||||||| || | |||| ||||       ||  ||    
T  35428589 tttataaaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaaaatttttat 35428490  T
Q  369 gaatacccctaaattaattactctttattcc----aacaacttacttacttttaatattctctc 428  Q
    |||||||| ||||||||||||||||||||||    | ||||||||||||||||||| |||||||    
T  35428489 gaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctc 35428426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 35121446 - 35121356
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacac 345  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||    
T  35121446 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaagactaaa-aaatacattggaaatagtcatcttcatttaatacac 35121356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 9411919 - 9411834
Alignment:
Q  363 ttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  9411919 ttccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 9411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 27332899 - 27333022
Alignment:
Q  321 aaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaat 420  Q
    ||||||| ||||||||||||||||| |||| ||||       ||| || ||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaat 27332998  T
Q  421 a--ttctctcataattaataaggg 442  Q
    |  |||||||||||| ||||||||    
T  27332999 attttctctcataatcaataaggg 27333022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 9412356 - 9412283
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagt 327  Q
    ||||||||||||  | |||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  9412356 tactccctccgattccttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagt 9412283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 259 - 439
Target Start/End: Complemental strand, 11908172 - 11907991
Alignment:
Q  259 cctccgaacctttatacaagaaacaaaaga-cataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnn 357  Q
    ||||||| ||| | |||||||||||||| | |||||| ||| | || |||  |||||||||||||||   ||| ||||||||||||  || |||||||      
T  11908172 cctccgatcctctttacaagaaacaaaaaaacataaatcattaagatcaagaaaatacattgaaaatgactattttcatttaatacttctgtacatttaa 11908073  T
Q  358 nnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataa 439  Q
         |||||||||||||  || ||||||||||||| |||||| ||||||| ||| |||||||| ||||||||||| |||||    
T  11908072 atttcttccatgaatacctttacattaattactcttgattccaccaacttatttatttttaatactctctcataataaataa 11907991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 13879071 - 13879141
Alignment:
Q  378 taaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||||||  ||||||||| ||||||||||||    
T  13879071 taaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcaca 13879141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 38859075 - 38859015
Alignment:
Q  366 catgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctct 427  Q
    ||||||| |||||| |||||||| | || ||| |||||| ||||||||||||||||||||||    
T  38859075 catgaatgcccctatattaattatt-ttgattacaacaatttacttacttttaatattctct 38859015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 267 - 446
Target Start/End: Original strand, 7243322 - 7243503
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  7243322 cctttatacaagaaacaaaagacataaaatatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatcc 7243421  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  7243422 atgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 7243503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 1365945 - 1365751
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||| |||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  1365945 tactctctccggtcctttatacaagaaacaaaagacatgaaacatcaggaccaa-gaaatacattgaaaatagttatcttcatttaatacatctctacat 1365847  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  1365846 ttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 1365751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 24337909 - 24338099
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||| ||||  ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||    
T  24337909 tactccttccggtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaa----cctctacat 24338004  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24338005 ttaaaaaaattccatgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 24338099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 19926680 - 19926872
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |    
T  19926680 tactccctccggtcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctactt 19926779  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    ||        | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  19926780 ttttttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcaca 19926872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 7105853 - 7105659
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  7105853 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaataaatacattgaaaatagtcatcttcatttaatacatttctacat 7105754  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaata--ttctctcataattaataagggcaca 446  Q
    ||       || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||    
T  7105753 ttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcaca 7105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 25187238 - 25187044
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||| |  |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25187238 tactccctctggtcctttatacaagaaacaaaagacataaaacattaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 25187139  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  25187138 ttaaaaaaattccatgaatatccttaaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggcaca 25187044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 39778543 - 39778739
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39778543 tactccctccggtcctttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 39778642  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||         |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  39778643 ttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 39778739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 267 - 444
Target Start/End: Original strand, 10728199 - 10728378
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||        | |    
T  10728199 cctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaattc 10728298  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggca 444  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||    
T  10728299 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggca 10728378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 10700132 - 10700311
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccat 368  Q
    |||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||    
T  10700132 tttatataagaaacaaaaaacgtaaaacatcaggaccaaggaaatacattgaaaatagttattttcatttaatacacctctacatttaaaaaaattccat 10700231  T
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||| | ||||||||||    
T  10700232 gaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcaca 10700311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 28831257 - 28831064
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28831257 tactccctccggtcctttatacaagacacaaaagatataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacgt 28831158  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaata--ttctctcataattaataagggcaca 446  Q
    ||        | |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||  |||||||||||| ||||||| ||||    
T  28831157 tttaaaaaaat-catgaatacccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacaca 28831064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 21344974 - 21345166
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||||   |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||| |||||||    
T  21344974 tactccctccagtcctttatacaagaaacaaaagacataaaacatcaagaccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacat 21345073  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    ||       ||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||| ||||||| ||||    
T  21345074 ttaaaacaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaattctctctcacaatcaataaggacaca 21345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 42993698 - 42993893
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaa-gacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctaca 352  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||| |    
T  42993698 tactccctccggtcctttatacaagaaacaaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctata 42993797  T
Q  353 tttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||        |||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| |  ||||||||||  ||||||||||||    
T  42993798 tttaaataaaatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataacaaataagggcaca 42993893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 41435502 - 41435696
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||| ||||||||||| |||||||||||||  |||||  |||| ||||||||||||| ||||||||||||||||| |||||||    
T  41435502 tactccctccggtcctttatataagaaacaaaaaacataaaacatcaacaccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctacat 41435601  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||       || ||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||  ||||||||| ||||||||||||    
T  41435602 ttaattttttttcatgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcaca 41435696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 267 - 428
Target Start/End: Original strand, 13693436 - 13693597
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttcc 366  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||        | |    
T  13693436 cctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctatatttaaaaaatattc 13693535  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctc 428  Q
    ||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| |||||||    
T  13693536 atgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctc 13693597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 267 - 446
Target Start/End: Original strand, 36191481 - 36191662
Alignment:
Q  267 cctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacattt--nnnnnnntt 364  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| |||||||||||||||| ||||               
T  36191481 cctttatacaagaaacaaaagacataaaacat-aggaccaagaaaatacattgaaaatagttatctttatttaatacacctctatatttcaaaaaaaaaa 36191579  T
Q  365 ccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
     ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  36191580 tcattaatacccctaaattaattactctttattcc-acaacttacttacttttaatattctctctcataataaataagggcaca 36191662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 11964436 - 11964256
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||  |||||||||  |||||           ||||||||| ||||||||||||||||| |||||||    
T  11964436 tactccctccggtcctttatacaagaaacaaaagac--aaaacatcaacaccaa-----------gaaaatagtcatcttcatttaatacacttctacat 11964350  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  11964349 tt-aaaaaattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcaca 11964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 10448962 - 10448824
Alignment:
Q  310 aaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttac 409  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||       ||  |||||||||| ||||||||||||| ||||||||| ||||||||    
T  10448962 aaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaacttac 10448863  T
Q  410 ttacttttaatattc--tctcataattaataagggcaca 446  Q
    |||||||||||||||  ||||||||| |||||| |||||    
T  10448862 ttacttttaatattctctctcataatcaataagagcaca 10448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 41462933 - 41462832
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||| || ||| |||||| ||||||||| || |||||||||||||||||||||| ||    
T  41462933 tactccttccggtcctttatacaagaaacaacagacataaaacatcaagatcaaggaaatatattgaaaatggtaatcttcatttaatacacctctatat 41462834  T
Q  354 tt 355  Q
    ||    
T  41462833 tt 41462832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 22066291 - 22066380
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatac 343  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||  | |||  |||||||||||||||||| |||||||||||||||    
T  22066291 tactccctcctgtcctttatacaagaaacaaaagacataaaacatcaacatcaataaaatacattgaaaatagtcatcttcatttaatac 22066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 22066384 - 22066463
Alignment:
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcaca 22066463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 16621977 - 16622056
Alignment:
Q  363 ttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataaggg 442  Q
    |||||||||| |||||| |||||||||||||  ||| | ||||||||||| |||||||||||||||||||| ||||||||    
T  16621977 ttccatgaatgcccctatattaattactcttatttctaccaacttacttatttttaatattctctcataataaataaggg 16622056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 9663814 - 9663991
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccat 368  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||  |||||||||       || |||    
T  9663814 tttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcat 9663913  T
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  9663914 gaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcaca 9663991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 35612911 - 35613106
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35612911 tactccctccagtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctacat 35613010  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||| ||||||||||||    
T  35613011 ttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcaca 35613106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 48905527 - 48905721
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||  |||||||    
T  48905527 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 48905626  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  48905627 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 48905721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 22515941 - 22515745
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctc--tac 351  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||  |||    
T  22515941 tactccctctgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatacattgaaaatagttatcttcatttaatacacctcaatac 22515842  T
Q  352 atttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||||       |||||| ||||  | ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  22515841 atttaaaaaaattccataaatattcttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 22515745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 23026177 - 23026373
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23026177 tactccctccgatcctttatacaagaaacaaaagacataaaatatcaggatcaaagaaatacattgaaaatagttatcttcatttaatacatctctacat 23026276  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||            ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  23026277 ttaaaaaaaaaaatcatgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcaca 23026373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 26848053 - 26848247
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||||| ||||||     
T  26848053 tactccctccgatcttttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacag 26848152  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  26848153 ttaaaaaaattctatgaacacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcaca 26848247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 254 - 442
Target Start/End: Complemental strand, 46320734 - 46320544
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||    
T  46320734 tactccctccggtcctttatacaagaaacaacagacataaaacatcaagaccaaagaaatacattgaaaatagtaatattcatttaatacacctctatat 46320635  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataaggg 442  Q
    ||       |||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  46320634 ttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataaggg 46320544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 50834306 - 50834113
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| | ||||||||    
T  50834306 tactccctc-gatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 50834208  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | ||||||||||    
T  50834207 ttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcaca 50834113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 50841547 - 50841740
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| | ||||||||    
T  50841547 tactccctc-gatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 50841645  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| | ||||||||||    
T  50841646 ttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcaca 50841740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 54748290 - 54748096
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||  |||||  |||||| ||||||||||||||||||||||||||||| |||||||    
T  54748290 tactccctccaatcctttatacaataaacaaaagacataaaacatcaacaccaagaaaatacgttgaaaatagttatcttcatttaatacacttctacat 54748191  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||  |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||| ||||||||||||    
T  54748190 ttaaaaaaattatatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcaca 54748096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 20922666 - 20922861
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||    
T  20922666 tactccctccggtcctttatacaaaaaacaaaagacataaaacattaggactaaggaaatacattgaaaatatttatcttcatttaatacacctctacat 20922765  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||         || ||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||  ||||||||||| |||||| |||||    
T  20922766 ttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcaca 20922861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 440
Target Start/End: Original strand, 49794876 - 49795038
Alignment:
Q  269 tttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccat 368  Q
    |||||||||||||||||||||||||||||||| |||||           ||||||||||||||||||||||||||||||||||||||       || |||    
T  49794876 tttatacaagaaacaaaagacataaaacatcaagacca-----------tgaaaatagttatcttcatttaatacacctctacatttaattttttttcat 49794964  T
Q  369 gaatacccctaaattaattactctttattccaacaacttacttacttttaata--ttctctcataattaataag 440  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||    
T  49794965 gaataccccttaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataag 49795038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 25095895 - 25096074
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||| ||||||||||||||||  ||||       
T  25095895 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacatttcta--- 25095991  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
                 |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||| ||||||||||||    
T  25095992 ------------tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcaca 25096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 25313551 - 25313470
Alignment:
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  25313551 atgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 25313470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 30363802 - 30363878
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttat 330  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  30363802 tactctctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaagaaaatacattgaaaatagttat 30363878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 25313625 - 25313559
Alignment:
Q  257 tccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaa 323  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25313625 tccctccgatcttttatacaagaaacaaaagacataaaacatcaggaccaaaaaaatacatttaaaa 25313559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 9663769 - 9663813
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacat 298  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  9663769 tactccctccgatcctttatacaagaaacaaaagacataaaacat 9663813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 32619643 - 32619589
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttat 330  Q
    ||||||||||| ||||||| ||||| |||||| |||| ||||| |||||||||||    
T  32619643 aagaaacaaaaaacataaatcatcaagaccaatgaaaaacattaaaaatagttat 32619589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 33280330 - 33280387
Alignment:
Q  371 atacccctaaattaattactctttattccaacaacttacttacttttaatattctctc 428  Q
    |||| |||| ||||| ||||||| ||||||| |||  |||||||||||||||||||||    
T  33280330 atactcctatattaactactcttaattccaataaccaacttacttttaatattctctc 33280387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 446
Target Start/End: Complemental strand, 27628038 - 27627859
Alignment:
Q  268 ctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnn-ttcc 366  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |  |||||||||        || |    
T  27628038 ctttatacaagaaacaaaagacataaaacatcaggatcaaggaaatacattgaaaatagttatcttcatttaatatatttctacatttaaaaaaaattac 27627939  T
Q  367 atgaatacccctaaattaattactctttattccaacaacttacttacttttaatattctctcataattaataagggcaca 446  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  27627938 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcaca 27627859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 783093 - 782899
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  783093 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 782995  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  782994 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 782899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 30537524 - 30537718
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||  |||||||    
T  30537524 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 30537623  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  30537624 ttaaaaatttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 30537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 36187619 - 36187425
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||| ||||||||    
T  36187619 tactccctccggtcttttatacaagaaacaaaagacataaaacatcaagaccaagaaaatacattgaaaatagttatctt-atttaatacatctctacat 36187521  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||        |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  36187520 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcaca 36187425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 43034023 - 43034217
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||  |||||  || ||||||||||||||| ||||||||||||||||| |||||||    
T  43034023 tactccctccggtcctttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 43034122  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  43034123 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcaca 43034217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 26877465 - 26877269
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  26877465 tactccctccggtcctttatacaagaaacaaaagatataaaacatcaagaccaaggaaatacattgaaaatagttatcttcagttaatacacctctacat 26877366  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  26877365 ttaaaaaaaaaaatcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacaca 26877269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 3068026 - 3067833
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  3068026 tactccctccggtcctttatacaataaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctacat 3067927  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       || |||||||||| |||||||||||  ||||||||| |  |||||| ||||||||||| |  ||||||||||| ||||||||||||    
T  3067926 ttagaaaaatt-catgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcaca 3067833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 25934646 - 25934545
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| |||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| ||    
T  25934646 tacttcctctgatcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagtcatcttcatttaatacacttctatat 25934547  T
Q  354 tt 355  Q
    ||    
T  25934546 tt 25934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 22651746 - 22651847
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    ||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||| |||||||||| |||| ||    
T  22651746 tactccctccagtcctttatacaagaaacaaaagacataaaacatcgagaccaaagaaatacattgaaaataatcatcttcttttaatacacttctatat 22651845  T
Q  354 tt 355  Q
    ||    
T  22651846 tt 22651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 50150212 - 50150404
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||  ||||||||||||||||||||||| ||||| || |  || ||  |||||||||||||||| | ||||||||||||||  | |||||||    
T  50150212 tacttcctccgctcctttatacaagaaacaaaagac-taaaatattaaaactaagaaaatacattgaaaataatcatcttcatttaatatgcttctacat 50150310  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       | | | |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  50150311 ttaaaaaact-ctaggaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacaca 50150404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 446
Target Start/End: Complemental strand, 33313483 - 33313336
Alignment:
Q  302 gaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnt-tccatgaatacccctaaattaattactctttattcca 400  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| | || ||||         | |||||||| || ||||||||||  |||||||||||    
T  33313483 gaccaaagaaatacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattcatgaatatccataaattaattcatctttattcca 33313384  T
Q  401 acaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
      |||||| ||||||||||| |  ||||||||||| ||||||||||||    
T  33313383 ctaacttatttacttttaattttctctctcataataaataagggcaca 33313336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 25934527 - 25934446
Alignment:
Q  366 catgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||||||||||| |||||||||| ||||||||||||  |||||| ||| ||||||| |  ||||||||||| ||||||||||||    
T  25934527 catgaataccc-taaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcaca 25934446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 29990031 - 29989964
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatac 343  Q
    ||||||||||| ||||||| ||||| |||||| |||| | ||||||||||| ||| ||||||||||||    
T  29990031 aagaaacaaaatacataaaccatcaagaccaatgaaaaatattgaaaatagctattttcatttaatac 29989964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 29989779 - 29989733
Alignment:
Q  382 ttaattactctttattccaacaacttacttacttttaatattctctc 428  Q
    |||||||||||| |||| || |||| |||||||||||||||||||||    
T  29989779 ttaattactcttaattctaataactaacttacttttaatattctctc 29989733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 40385127 - 40385322
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  40385127 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaagaccaaagatatacattgaaaatagtcatcttcatttaatacacttctacat 40385226  T
Q  354 tt-nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||         |||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||| |  ||||||||||| ||||||||||||    
T  40385227 ttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcaca 40385322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 254 - 442
Target Start/End: Complemental strand, 24868767 - 24868577
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||| | | ||  |||||||||||||||||| |||||||||||||||||||||| |     
T  24868767 tactccatccgatcctttatacaagaaacaaaagacataaaacatcaagtctaagaaaatacattgaaaatagtaatcttcatttaatacacctctataa 24868668  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataaggg 442  Q
    ||       |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||    
T  24868667 ttaagaaaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataaggg 24868577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 33314628 - 33314434
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||  ||||||     
T  33314628 tactacctccgatcctttatacaagaaacaaaatacataaaacatcaagaccaaggaaatacattgaaaatggtcatcttcatttaatacatttctacac 33314529  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    ||       || ||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||| ||| ||||||||    
T  33314528 ttaaaaaaatttcatgaatattcctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcaca 33314434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 3097441 - 3097638
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  ||||||||||||||||| | |||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  3097441 tactccctccggtcctttatacaagaaacata-gacataaaacatcaagatcaaggaaatacattgaaaatagtaatcttcatttaatacacttctacat 3097539  T
Q  354 tt----nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatatt--ctctcataattaataagggcaca 446  Q
    ||            |||||| ||||||||||||||| | ||||||||||||  |||||| ||||||||||| ||  |||||||||| ||||||||||||    
T  3097540 ttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcaca 3097638  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 446
Target Start/End: Original strand, 41174553 - 41174748
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctaca- 352  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||| || |||| |     
T  41174553 tacttcctccggtcctttatgcaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatatacttctatat 41174652  T
Q  353 tttnnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaa--tattctctcataattaataagggcaca 446  Q
    |||        | ||||||||||||| |||||||| ||||||||| ||  |||||| ||||||||||  |  ||||||||||| ||||||||||||    
T  41174653 tttaaaaaaaattcatgaatacccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcaca 41174748  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 21262495 - 21262596
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||| ||||||  |||||||| |||||||||||||||||||||||||  |||||  |||||||||||||||||| ||||||||||||||| | |||||||    
T  21262495 tactacctccggtcctttataaaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacat 21262594  T
Q  354 tt 355  Q
    ||    
T  21262595 tt 21262596  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 21262907 - 21262965
Alignment:
Q  370 aatacccctaaattaattactctttattccaacaacttacttacttttaatattctctc 428  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21262907 aatacccttaaattaattactctttattccatcaacttacttacttttaatattctctc 21262965  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 4238237 - 4238151
Alignment:
Q  313 tacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacccctaaattaattactctttattcca 400  Q
    |||||||||||||||||||||||||||||||| ||||||||||       |||| |||||||||||||||||||||||||| ||||||    
T  4238237 tacattgaaaatagttatcttcatttaatacatctctacattt-aattttttccctgaatacccctaaattaattactcttgattcca 4238151  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 446
Target Start/End: Complemental strand, 4238085 - 4237958
Alignment:
Q  323 atagttatcttcatttaatacacctctacatttnnnnnnnttcc--atgaatacccctaaattaattactctttattccaacaacttacttacttttaat 420  Q
    ||||||||||||||||||| || ||||||||||       || |  ||||||||||||||||||||||||||| |||||| ||| ||||||  ||||| |    
T  4238085 atagttatcttcatttaatgcatctctacatttaattatttttccgatgaatacccctaaattaattactcttgattccaccaatttacttcattttatt 4237986  T
Q  421 attc--tctcataattaataagggcaca 446  Q
    ||||  ||||||||| ||||| ||||||    
T  4237985 attctatctcataataaataacggcaca 4237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 18471934 - 18471880
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttat 330  Q
    ||||||||||| |||||||  |||| |||||| |||| |||||||||||||||||    
T  18471934 aagaaacaaaatacataaactatcacgaccaatgaaaaacattgaaaatagttat 18471880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 446
Target Start/End: Complemental strand, 30688 - 30516
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatgaatacc 375  Q
    ||||||||||||||||||| ||||| |||| | |||||||||||||||||||||| || ||||||||||||||| |||||       |||||| ||||||    
T  30688 aagaaacaaaagacataaatcatcaagaccgaggaaatacattgaaaatagttattttaatttaatacacctctgcatttaaattttttccataaatacc 30589  T
Q  376 cctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggcaca 446  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  30588 cctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataataaataagggcaca 30516  T

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Target: scaffold0057; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 276 - 443
Target Start/End: Original strand, 30741 - 30910
Alignment:
Q  276 aagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttnnnnnnnttccatg-----a 370  Q
    ||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||| |||| |||||| ||||| ||||||       |||||||     |    
T  30741 aagaaacaaaagacataaatcatcaagaccaaggaaataaattgaaaatagttattttca-ttaatatacctcaacatttaaattttttccatgaataca 30839  T
Q  371 atacccctaaattaattactctttattccaacaacttacttacttttaatat--tctctcataattaataagggc 443  Q
    ||||||||||||||||||||||| |||||| ||    || ||||||||||||  ||||||||||| |||||||||    
T  30840 atacccctaaattaattactcttgattccacca----acatacttttaatattctctctcataataaataagggc 30910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 254 - 446
Target Start/End: Complemental strand, 7005 - 6809
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||| |||||  |||||| |||||||||||||||||||||||| | ||  || |||||||||||||||||||||||||||||||||||| ||||||||    
T  7005 tactccatccgattctttattcaagaaacaaaagacataaaacattaagattaaggaaatacattgaaaatagttatcttcatttaatacatctctacat 6906  T
Q  354 tt--nnnnnnnttccatgaatacccctaaattaattactctttattccaacaacttacttacttttaatattc--tctcataattaataagggcaca 446  Q
    ||         ||| ||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||| |||||| |||||    
T  6905 ttaatttttttttctatgaatatccttaaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcaca 6809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 258218 - 258356
Alignment:
Q  254 tactccctccgaacctttatacaagaaacaaaagacataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacat 353  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||    
T  258218 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatat 258317  T
Q  354 ttnnnnnnnttccatgaatacccctaaattaattactct 392  Q
    ||       |||||| || ||||||||||||||||||||    
T  258318 ttaagaaaattccatcaacacccctaaattaattactct 258356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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