View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_high_9 (Length: 351)
Name: NF2520_high_9
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 15176620 - 15176955
Alignment:
| Q |
2 |
acagctttaagatatggcannnnnnncaaatcttcttctctaatttctttctcctttttatcatctccaatcacccctttaatctcttgtacaagttttt |
101 |
Q |
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| T |
15176620 |
acagctttaagatatggcatttttttcaaatcttcttctctaatttctttctcctttttatcatctccaatcacccctttaatctcttgtacaagttttt |
15176719 |
T |
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| Q |
102 |
gttgtatatcttggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaacataaagtaca |
201 |
Q |
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| T |
15176720 |
cttgtatatcttggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaactcggaacataaagtaca |
15176819 |
T |
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| Q |
202 |
aattttaccatcatcaagttggctccttttattatcttcttccaataactccaaatccaacaatgtatctacatatgacaaaacaaactcaccatgtgat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15176820 |
aattttaccatcatcaagttggctccttttattatcttcttccaataactccaaatccaacaatgtatctacatatgacaaaacaaattcaccatgtgat |
15176919 |
T |
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| Q |
302 |
tcattgacattgttctctctatcaatccttaatctc |
337 |
Q |
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| T |
15176920 |
tcattgagattgttctctctatcagtccttaatctc |
15176955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 26506582 - 26506512
Alignment:
| Q |
122 |
accaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
192 |
Q |
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| T |
26506582 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgagaaactccgaaca |
26506512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 2326945 - 2326867
Alignment:
| Q |
114 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
192 |
Q |
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| T |
2326945 |
ggtacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaaca |
2326867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 2303390 - 2303312
Alignment:
| Q |
114 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
192 |
Q |
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| T |
2303390 |
ggtacttaaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaaca |
2303312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 2350966 - 2350888
Alignment:
| Q |
114 |
ggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcattcagaaactcggaaca |
192 |
Q |
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|||||||||||||||| ||||| ||||||| ||| || || ||||| |||||| | || ||||||| |||||| ||||| |
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| T |
2350966 |
ggtacttcaccaaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaaca |
2350888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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