View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_1 (Length: 888)
Name: NF2520_low_1
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 219 - 883
Target Start/End: Original strand, 9808317 - 9808986
Alignment:
| Q |
219 |
gttgacgatgatgataagttgaatctcccagaaagatat--tcaatctctcttggttgggagttgagggaaggtatggggggatgggcgttatcttggag |
316 |
Q |
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| T |
9808317 |
gttgacgatgatgataagttgaatctcccataaagatatgatcaatctctcttggttggggattgagggaaggtatgaggggatgggcgttatcttggag |
9808416 |
T |
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| Q |
317 |
---agtaccttttgattgggaagtggggctaattaatgatttgttaggtgtcctccgaggttttagaggggcggatgaggaggatctttggtggtcgatt |
413 |
Q |
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| T |
9808417 |
gagagtaccttttgattgggaagtggggctaattaatgatttgttaggtgtcctccgaggttttagaggggcggatgaggaggatctttggtggtcgatt |
9808516 |
T |
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| Q |
414 |
ccggatgagggtaggtcattctcggttcgatcatcttataaggtgctagaggagaggttgttagttgagggtggattgactacgatggaggagaaggttt |
513 |
Q |
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| T |
9808517 |
ccggatgagggtaggtcattctcggttcgatcatcttataaggtgctagaggagaggttgttagttgagggtggattgactacgatggaggagaaggttt |
9808616 |
T |
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| Q |
514 |
ttgattatatatggaagtgttccacgcgaacaaaagttattactttctcttggaccttactccttaatagaatcccatcgaaagtaaatcttgcgattca |
613 |
Q |
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| T |
9808617 |
ttgattatatatggaagtgttcctcgcgaacaaaagttattgctttcttttggaccttactccttaatagaatcccatcgaaagtaaatcttgcggtttg |
9808716 |
T |
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| Q |
614 |
gaatgtgttgcctccggatgcctctttaacttgtgtgttgtgtaataatggagtggaaacatcatatcaccttttgttagattgtaatgttgtatcctta |
713 |
Q |
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| T |
9808717 |
caatgtattgcctccggatgcctctttaactggtgtgttgtgtaataatggagtggaaacatcatatcaccttttgttagattgtaatgttgtatcctta |
9808816 |
T |
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| Q |
714 |
gtgtggcgaaaggcgtgtgttttgctcgatttgaagtgttggagtgatgtggtgatgtcaaagaaatttcaaagagggtatagcatgatttggcatgccg |
813 |
Q |
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| T |
9808817 |
gtgtggcgaaaggtgtgtgttttgctcgatttgaagtgttggagtgatgtggtgatgtcaaagaaatttcaaagagggtatagcatgatttggcatgccg |
9808916 |
T |
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| Q |
814 |
caatttgggtaattagggtcgagagaaatgggagaatctttaatagtatcgttaaggatattgatgatgt |
883 |
Q |
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| T |
9808917 |
caatttgggtaattaggagcgagagaaatgggagaatctttaatagtatcgttaaggatattgatgatgt |
9808986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 9808111 - 9808263
Alignment:
| Q |
17 |
aattattactttgaatttatgttaatctgtgtgtatattgtgtaatatatcgtgtgattatattcatat----gatggctttgatttgtttgtagaatga |
112 |
Q |
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| T |
9808111 |
aattattactttgaatttatgttaatctgtgtgtatattgtgtaatatatcgtgtgattatattcatatatatgatggctttgatttgtttgtagaatga |
9808210 |
T |
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| Q |
113 |
ttatttattgaatactgtcaacggttttactatcccttgattaaatgaacttg |
165 |
Q |
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| T |
9808211 |
ttatttattggatactgtcaacggttttactatcccttgattaaatgaacttg |
9808263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 688
Target Start/End: Original strand, 44164407 - 44164451
Alignment:
| Q |
644 |
ttgtgtgttgtgtaataatggagtggaaacatcatatcacctttt |
688 |
Q |
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| T |
44164407 |
ttgtgtgttgtgtgataatggagtggaaacatcgaatcacctttt |
44164451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 671
Target Start/End: Original strand, 637632 - 637704
Alignment:
| Q |
599 |
aaatcttgcgattcagaatgtgttgcctccggatgcctctttaacttgtgtgttgtgtaataatggagtggaa |
671 |
Q |
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| T |
637632 |
aaatcttgcgattcataatgtattgcctccatatgggtctattacgtgtgtgttgtgtaataatggggtggaa |
637704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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