View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_12 (Length: 325)
Name: NF2520_low_12
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 54946890 - 54947049
Alignment:
| Q |
8 |
ccaagaatattccatctttttaaacatgaaaacatatagaagagaagcacgacaccaatgaaattgcaaaacattat-----------gcgtttgttagc |
96 |
Q |
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| T |
54946890 |
ccaacaatattctatctttttaaacatgaaaacatatagaagagaagcacgacaccaatgaaatcacaaaacattattacagtaacgtgcgtttgttagg |
54946989 |
T |
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| Q |
97 |
aataaaaaaggacgattttgacattttataatttataaattgtataaaaaattagattct |
156 |
Q |
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| T |
54946990 |
aataaaaaaagacgattttgacattttataatttataaattgtataaaaaattagattct |
54947049 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 54947103 - 54947201
Alignment:
| Q |
210 |
acaaaagtgataattttatcataaaagtgatttatagtttgtttattattgnnnnnnnnngtagaataattttagatatgcaaccattagacctgaata |
308 |
Q |
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| T |
54947103 |
acaaaagtgataattttatcataatagtgatttatagtttgtttattattgaaaaaaaaagtagaataattttagatatgcaaccattagacctgaata |
54947201 |
T |
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