View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_13 (Length: 321)
Name: NF2520_low_13
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 3845224 - 3845512
Alignment:
| Q |
20 |
cttcaatgtctcgactcaaaccactaggtttcttgtttgaggtgtgtgtatgtattatcaaaatatcaatattttagagagccaattaagataattacaa |
119 |
Q |
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| T |
3845224 |
cttcaatgtctcgactcaaaccactaggttactctttcgaggtgtgtgtatgtattatcaaaatatcaatattttagagagccaattaagataattacaa |
3845323 |
T |
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| Q |
120 |
agctttattaaaaaagactaatataaattgagtgatatatagtatcaatgatgaagccagctccttactgtttcattatgttccttaaaatgatgaaaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845324 |
agctttattaaaaaagactaatataaattgagtgatatatagtatcaatgatgaagccagctccttactgtttcattatgttccttaaaatgatgaaaag |
3845423 |
T |
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| Q |
220 |
tatgtgcagtatgacttattttactctaggtggaccaagatcctgttttattttccctctagaaatttgtgaaatcaatactactattc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845424 |
tatgtgcagtatgacttattttactctaggtggaccaagatcctgttttattttccctctagaaatttgtgaaatcaatactactattc |
3845512 |
T |
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