View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_18 (Length: 245)
Name: NF2520_low_18
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 8279941 - 8279737
Alignment:
| Q |
17 |
ccacaagcatcgcagtatcttgttttatatccaggtggttttcgatggaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaagaatcaggat |
116 |
Q |
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| T |
8279941 |
ccacaagcattacagtatcttgttttatatccaggtggttttcgatggaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaaggatcgggat |
8279842 |
T |
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| Q |
117 |
ttgcacattctccatgcaagacatagctgcaattgatattttcacaatggtaacttgatccaaaccctaattctccacaaccactgcatgtgtatggtgc |
216 |
Q |
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| T |
8279841 |
ttgcacatacttcatgaaggacataactgcaattgatattttcgcaatggtagcttgatccgaaccctagttctccacaaccagtgcatgtgtatggggc |
8279742 |
T |
|
| Q |
217 |
tcctg |
221 |
Q |
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||||| |
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| T |
8279741 |
tcctg |
8279737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 8262442 - 8262654
Alignment:
| Q |
17 |
ccacaagcatcgcagtatcttgttttatatccaggtggttttcgatggaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaagaatcaggat |
116 |
Q |
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|||||||||| |||||||||||||||| ||||| |||||| |||||| ||||||||||||| | ||||||||||||| ||| | || |||||||| |
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| T |
8262442 |
ccacaagcattacagtatcttgttttatttccagttggtttcttatggaattcgaaatagctttctttgaaaaatggatgacgggcatgaggatcaggat |
8262541 |
T |
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| Q |
117 |
ttgcacattctccatgcaagacatagctgcaattgatattttcacaatggtaacttgatccaaaccctaattctccacaaccactgcatgtgtatggtgc |
216 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8262542 |
atgcacattctccatgcaggacataactgcaattgatattttcacaatggtaacttgatccaaaccctaattctccacaaccactgcatgtgtatggtgc |
8262641 |
T |
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| Q |
217 |
tcctgcgggcttc |
229 |
Q |
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| T |
8262642 |
tcctgcgggcttc |
8262654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 8322525 - 8322323
Alignment:
| Q |
17 |
ccacaagcatcgcagtatcttgttttatatccaggtggttttcgatggaactcgaaatagcttttctcgaaaaatggatgaaaggcgtaagaatcaggat |
116 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||||| | |||| || ||| |||||||| ||||||||||||| ||| | || |||||||| |
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| T |
8322525 |
ccacaagcattacagtatcttcttttatatccaggtggttttctaaggaaatcaaaacagcttttcctgaaaaatggatgacgggcatgaggatcaggat |
8322426 |
T |
|
| Q |
117 |
ttgcacattctccatgcaagacatagctgcaattgatattttcacaatggtaacttgatccaaaccctaattctccacaaccactgcatgtgtatggtgc |
216 |
Q |
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||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | |
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| T |
8322425 |
atgcacattctccatgcaggacataactgcaattcttattttcacaatggtaacttgatccaaaacctaattctttacaaccgctgcatgtgtatggttc |
8322326 |
T |
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| Q |
217 |
tcc |
219 |
Q |
| |
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||| |
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| T |
8322325 |
tcc |
8322323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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