View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2520_low_2 (Length: 630)
Name: NF2520_low_2
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Original strand, 46092846 - 46093240
Alignment:
| Q |
3 |
atcaccatttccttgaatcaatgaatagagtttgtatatagtgttaattaactgattatgtgaggttgcgtagcttgttctggttacgaatcaatgaaag |
102 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092846 |
atcacaatttccttcaatcaatgaatagagtttgtatatagtgttaatta-ctgattatgtgaggttgcgtagcttgttctggttacgaatcaatgaaag |
46092944 |
T |
|
| Q |
103 |
gagcatataattagtataaacaaaattcagacagttgggccatatagtcgatatatgtagctgttgtatgacgacaggagcatcattgagaggataagtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092945 |
gagcatataattagtataaacaaaattcagacacttgggccatatagtcgatatatgtagctgttgtatgacgacaggagcatcattgagaggataagtg |
46093044 |
T |
|
| Q |
203 |
gattcctttggccacacgcaatcgtgtggttgccacacaacacatcctatatatgcataaaacaaattactactacttattaagtatatttgacttcata |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093045 |
gattcctttggccacacgctatcgtgtggttgcc-----acacatcc----tatgcataaaacaaattactactacttattaagtatatttgacttcata |
46093135 |
T |
|
| Q |
303 |
tctttcac-aaaaaagagtatatttgacttaattcatatccaaccaatgtgctacccattattttatgcaatccttgtcttacgtaaagcaataaaaaat |
401 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093136 |
tctttcacaaaaaaagagtatatttgacttaattcatatccaaccaatgtgctacccattattttatgcaatccttgtcttacgtaaagcaataaaaaat |
46093235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 491
Target Start/End: Original strand, 46093238 - 46093274
Alignment:
| Q |
455 |
aatattgcttaattatcataaaaacttaaatattttg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093238 |
aatattgcttaattatcataaaaacttaaatattttg |
46093274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 614
Target Start/End: Original strand, 46093330 - 46093365
Alignment:
| Q |
579 |
aaccatgcaaaagtgtatttgcactattgccccatc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093330 |
aaccatgcaaaagtgtatttgcactattgccccatc |
46093365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University