View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2520_low_21 (Length: 228)

Name: NF2520_low_21

Description: NF2520

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2520_low_21

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 199; E-Value: 1e-108

Query Start/End: Original strand, 16 - 214

Target Start/End: Complemental strand, 36086264 - 36086066

Alignment:

Q	16	aaaagaaggaaggtatggatctgagcacaacacttggttatactcgtggatgctttcaaacctctcgaagaagagaaagttgcttcagccaatctcaagt	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36086264	aaaagaaggaaggtatggatctgagcacaacacttggttatactcgtggatgctttcaaacctctcgaagaagagaaagttgcttcagccaatctcaagt	36086165	T

Q	116	cgctatggaagaaagtttaggaaaatttgaagactaaggtagctggagatgctgctcctggcgatgtttagattcttcttacttctaaggaacattctg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36086164	cgctatggaagaaagtttaggaaaatttgaagactaaggtagctggagatgctgctcctggcgatgtttagattcttcttacttctaaggaacattctg	36086066	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 162 - 206

Target Start/End: Original strand, 48392994 - 48393038

Alignment:

Q	162	agatgctgctcctggcgatgtttagattcttcttacttctaagga	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48392994	agatgctgctcctggtgatgttcagattcttcttacttctaagga	48393038	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]