View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_3 (Length: 499)
Name: NF2520_low_3
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 12125853 - 12126250
Alignment:
| Q |
1 |
tgtaaatcaatacatatacttgcacgaacaaacattcactacaagataaataaatatgcatatgcttaaacgtgaaaacacaaaacgttgggaataaact |
100 |
Q |
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| T |
12125853 |
tgtaaatcaatacatatatttgcacgaacaaacattcactacaagataaataaatatgcatatgctcaaacgtgaaaacacaaaaggttgagaataaact |
12125952 |
T |
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| Q |
101 |
tctcattcctatgtctgtaagaatgcaatattcctatgtct--------gtagtcatgtataaacagttgaaacaaatcattgaaattataaactgtgac |
192 |
Q |
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| T |
12125953 |
tctcattcctatgtctgtaagaatgcaatatgccaaaaacttaacatgtgtagtcatgtataaacagttgaaacaaatcattgaaattataaactgtgac |
12126052 |
T |
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| Q |
193 |
gattttaagattataaattccgatcattttaatctccaaaatttgcaaatagataaaaatataccaaaattttacagttcaatgaaaataaccgatgttt |
292 |
Q |
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| T |
12126053 |
gattttaagattataaattccgatcattttaatctccaaaatttgcaaatagacaaaaatataccaaaattttacaattgaaagaaaataaccgatgttt |
12126152 |
T |
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| Q |
293 |
tacaattgtaggtactaatctgatgaaactaaaattttataaaactcaaactatcactatgcatcatcgccattgtcatcgctagagcaatcattgtc |
390 |
Q |
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| T |
12126153 |
tacaattgtaggtactaatctgatgaaactaaaattttataaaactcaaactatcactatgcatcatcgccattgtcatcgctagagcgatcgttgtc |
12126250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 394
Target Start/End: Original strand, 12124132 - 12124250
Alignment:
| Q |
276 |
gaaaataaccgatgttttacaattgtaggtactaatctgatgaaactaaaattttataaaactcaaactatcactatgcatcatcgccattgtcatcgct |
375 |
Q |
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| T |
12124132 |
gaaaataaccgatgatttaattttgtaggtactaatttggtgaaactaaaattatataaaactccaactatcactatgcatcattgccatcgtcatcgct |
12124231 |
T |
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| Q |
376 |
agagcaatcattgtcgttg |
394 |
Q |
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| T |
12124232 |
ggagcgatcactgtcgttg |
12124250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 12123807 - 12123857
Alignment:
| Q |
141 |
tgtagtcatgtataaacagttgaaacaaatcattgaaattataaactgtga |
191 |
Q |
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| T |
12123807 |
tgtagtcatgtataaacagttgaaacaaatcattgaaattataaactgtga |
12123857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 2374018 - 2373969
Alignment:
| Q |
214 |
gatcattttaatctccaaaatttgcaaatagataaaaatataccaaaatt |
263 |
Q |
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| T |
2374018 |
gatcattttaatctccaaaatttgcaagtagacaaaaatatacccaaatt |
2373969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 12124042 - 12124089
Alignment:
| Q |
209 |
attccgatcattttaatctccaaaatttgcaaatagataaaaatatac |
256 |
Q |
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||||| ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12124042 |
attccaatcattttaatctccaaaatttgcaaataaacaaaaatatac |
12124089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 2368686 - 2368625
Alignment:
| Q |
3 |
taaatcaatacatatacttgcacgaacaaacattcactacaagataaataaatatgcatatg |
64 |
Q |
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| T |
2368686 |
taaatcagtaaatatatttgcaggaacaaacatccattagaagataaataaatatgcatatg |
2368625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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