View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2520_low_6 (Length: 428)
Name: NF2520_low_6
Description: NF2520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2520_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 17840718 - 17841047
Alignment:
| Q |
18 |
atattcagtgcatgcttgatttcgtcatattctctaatttggacggtggattttggaaggtggtgagtgtcaattccgtgtatcaattttctaacacaca |
117 |
Q |
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| T |
17840718 |
atattcagtgcatgcttgatttcgtcatattctctaatttggacggtggattttggaaggtggtgagtgtcaattcagtgtatcaattttctaatacaca |
17840817 |
T |
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| Q |
118 |
ctaatggccctaataatcatttaatttatgaataatacgacttggctaaggtggatttatatataagtggaaattaat-aaaaaatttaagtgtctacct |
216 |
Q |
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| T |
17840818 |
ttaatggccctaataatcatttaatttatgaataatacgacttggctgaggtggatt--tatataagtggaaattaatgaaattttttgagtgtctacct |
17840915 |
T |
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| Q |
217 |
tgtttagactttaaattaaactagtttattgtttgtaagnnnnnnnnngcaataacttgaattgtaagtttaacattttctattaaaattgtcggctata |
316 |
Q |
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| T |
17840916 |
tgtttagactttaaattaaattagtttattgtttgtaagtttttttttccaataacttgaattgtaagtttaacattttctattaaaattgtcggctata |
17841015 |
T |
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| Q |
317 |
atttgatcgctgaccttaccttatgataagac |
348 |
Q |
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| T |
17841016 |
atttgatcgctgaccttaccttatgataagac |
17841047 |
T |
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