View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_high_1 (Length: 1004)
Name: NF2521_high_1
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 49 - 989
Target Start/End: Complemental strand, 40962564 - 40961638
Alignment:
| Q |
49 |
atcaaactcagaaccttattgcgattgagcataactcccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacac |
148 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40962564 |
atcaaactcagaaccttattgcgattgagcataacacccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacac |
40962465 |
T |
|
| Q |
149 |
tgaaagccaataacatatcatatcagtcccgaaggagtattccagtgaaatgtattataaaatctcaagctcacttgaattttcatctaagtagagacca |
248 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40962464 |
tgaaagccgataacatatcatatcagtcccgaaggagtattccagtgaaatgtattataaaatctcaagctcacttgaattttcatctaagtagagacca |
40962365 |
T |
|
| Q |
249 |
attcattgataaggcgtttatatattcacaagttccattaaggaaattgtagaatcactggaagtgacaatatcatggacatgtatgtagtttgtacttg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40962364 |
attcattgataaggcgtttatatattcacaagttccattaaggaaattgtagaattactagaagtgacaatatcatggacatgtatgtagtttgtacttg |
40962265 |
T |
|
| Q |
349 |
gaaaagagaactaaggagaaaaagagaaaaacaataaaccttccggtatctccagatcccaaaggtttaattggcctaaagtgctttaggcttatctgtt |
448 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40962264 |
gaaaagagaa-----------------aaaaaaataaaccttccggtatctccagatcccaaaggtttaattggcctaaagtgctttaggcttatctgtt |
40962182 |
T |
|
| Q |
449 |
ctccattttcgatgatctgcaaaaccatagtgttgtctgtaaccatattgtaaaataaaatcctaaatatt---tactcagctaacataaacaataaata |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40962181 |
ctccattttcgatgatctgcaaaaccatagtgttgtgtgtaaccatggtgtaaaataaaatcctaaatattatttactcagctaacataaacaataaata |
40962082 |
T |
|
| Q |
546 |
acaagaaattcgttcaaatgggaaaataataccttttggattgctctccaagcatcattatccttcctatgaggtttcgggtgaaccacttttgaatgat |
645 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40962081 |
acaagaaattcgttcaaatgggaaaataataccttttggattgctctccaagcatcattatccttcctatgaggtttcgggtgaaccacttttgaatgat |
40961982 |
T |
|
| Q |
646 |
ttaaccataaatcatccggtttctgacgaagatcataaaaaactgatgtcataatggagaatccaattgaactttaaaagacaagaagctaacaactaca |
745 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40961981 |
ttagccataaatcatccggtttctgacgaagatcataaaaaactgatgtcataatggagaatccaattgaactttagaagacaagaagctaacaactaca |
40961882 |
T |
|
| Q |
746 |
cgttattacctgattagcgtctggaagttctctcactgcctcaccaacattttctgcagtttgtttgacctgtgacacataaacttggttataacatgga |
845 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40961881 |
ccttattacctgattagcgtctggaagttctctcactgcctcaccaacattttctgcagtttgtttgacctgtgacacataaacttggttataacatgga |
40961782 |
T |
|
| Q |
846 |
aaataaaaagcataatagattgaacaatctttcctactattgcaaacaatgtcaacaaatttatatgtnnnnnnngagctgaaaatagcaaacaaaccaa |
945 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
40961781 |
aaataaaaagcataatagattgaacaatctttcctactattgcaaacaatgtcaacaaatgtatatgtaaaaaaagagctgaaaatagcaaacaaaccaa |
40961682 |
T |
|
| Q |
946 |
ttgttctccctcctttgcagtatcttctttaatgcagttgtgaa |
989 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40961681 |
ttgttctccctcctttgcagtatcttctttaatgcagttgtgaa |
40961638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 572 - 671
Target Start/End: Complemental strand, 22797166 - 22797067
Alignment:
| Q |
572 |
taataccttttggattgctctccaagcatcattatccttcctatgaggtttcgggtgaaccacttttgaatgatttaaccataaatcatccggtttctga |
671 |
Q |
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||||||||| || || |||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||| | ||||| ||| || ||||||||| |
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| T |
22797166 |
taataccttctgaatagctctccaagcagcatcatccctcctatgaggtttagggtgaaccacttttgaatgattcatccatagatcttctggtttctga |
22797067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 22797940 - 22797873
Alignment:
| Q |
409 |
aaaggtttaattggcctaaagtgctttaggcttatctgttctccattttcgatgatctgcaaaaccat |
476 |
Q |
| |
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||||||||||||||| |||| ||||| | || ||||||||||||| | || ||||||||||||||||| |
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| T |
22797940 |
aaaggtttaattggcttaaaatgcttcaagcctatctgttctccactctccatgatctgcaaaaccat |
22797873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 22798317 - 22798227
Alignment:
| Q |
61 |
accttattgcgattgagcataactcccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacactga |
151 |
Q |
| |
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|||||||| || ||||||||||| |||| |||||||||||||| || || | |||| ||||||| ||||||||| ||||| ||||||| |
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| T |
22798317 |
accttattacggttgagcataacagccttctccatagccttcatggcaaaatgttgatcagttccacatagctccacaagatggacactga |
22798227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 807
Target Start/End: Complemental strand, 22796986 - 22796937
Alignment:
| Q |
758 |
attagcgtctggaagttctctcactgcctcaccaacattttctgcagttt |
807 |
Q |
| |
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|||||| ||||| |||||||||| ||| ||| |||||||||||||||||| |
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| T |
22796986 |
attagcatctgggagttctctcaatgcatcatcaacattttctgcagttt |
22796937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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