View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_high_10 (Length: 329)
Name: NF2521_high_10
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 28813401 - 28813725
Alignment:
| Q |
10 |
tttctcataaattagttaaatgaaacatttaatttcttgattgatgggagaggacgctggtctaggttggagagaatgatttcgattccagtttcaagat |
109 |
Q |
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| T |
28813401 |
tttctcataaattagttaaatgaaacatttaatttcttgattgattggagaggatgctggtctaggttggagagaatgatttcgattccagtttcaaggt |
28813500 |
T |
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| Q |
110 |
gagagaggaagaagaagaacatgagaagcaggagagtgtaagacagaaatgtttgaaagctgctgtcaagtgtaagaatgaaactagcgtaagtcgcaag |
209 |
Q |
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| T |
28813501 |
gagagaggaagaagatgaacatgagaagcaggagagtgtaagacagaaatgtttgaaagctgctgtcaagtgtaagaatgaaactagcgtgagtcgcaag |
28813600 |
T |
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| Q |
210 |
ttaactcacgcgggggcaatatgaacatttactt-------------------tggaaatgggcagaattcatg-ttctgtagttgatattcttcccctt |
289 |
Q |
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| T |
28813601 |
ttaactcatgcggaggtaatatggacatttactttaagaatgagcagaatatttggtaaaaagcagaattcatggttctgtagttgatattcttcccctt |
28813700 |
T |
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| Q |
290 |
cttaacttgtttgtagtggactgat |
314 |
Q |
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| T |
28813701 |
cttgacttgtttgtagtggactgat |
28813725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 9539079 - 9539125
Alignment:
| Q |
205 |
gcaagttaactcacgcgggggcaatatgaacatttactttggaaatg |
251 |
Q |
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| T |
9539079 |
gcaagttaacttatgcaggggcaatatgaacatttactttgggaatg |
9539125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 17797016 - 17797054
Alignment:
| Q |
208 |
agttaactcacgcgggggcaatatgaacatttactttgg |
246 |
Q |
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| T |
17797016 |
agttaactcacgcaggggcaatatggacatttactttgg |
17797054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 38147072 - 38147112
Alignment:
| Q |
204 |
cgcaagttaactcacgcgggggcaatatgaacatttacttt |
244 |
Q |
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| T |
38147072 |
cgcaagttaactcacgcagaggtaatatgaacatttacttt |
38147112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 38225807 - 38225767
Alignment:
| Q |
204 |
cgcaagttaactcacgcgggggcaatatgaacatttacttt |
244 |
Q |
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| T |
38225807 |
cgcaagttaactcacgcagagacaatatgaacatttacttt |
38225767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 37576621 - 37576576
Alignment:
| Q |
204 |
cgcaagttaactcacgcgggggcaatatgaacatttactttggaaa |
249 |
Q |
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| T |
37576621 |
cgcaagttaactcacgtaggggtaatatggacatttactttggaaa |
37576576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 42883182 - 42883146
Alignment:
| Q |
208 |
agttaactcacgcgggggcaatatgaacatttacttt |
244 |
Q |
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||||||||||||| ||| ||||||||||||||||||| |
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| T |
42883182 |
agttaactcacgcagggacaatatgaacatttacttt |
42883146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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