View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_high_13 (Length: 289)
Name: NF2521_high_13
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10088529 - 10088766
Alignment:
| Q |
1 |
gtgttccatcagtgtcgttaactgtgggtagcggaaaatagcagtttgttcaaattacactgcgcagcagtcttatagtgccattatagccgctactatt |
100 |
Q |
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| T |
10088529 |
gtgttccatcagtgtcgttaactgtgggtagcggaaaatagcggtttgttcaaattacactgcgcagcagtcttatagtgccattatagccgatgctatt |
10088628 |
T |
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| Q |
101 |
tgacaatattttctacataaattaaatactgtattgcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagcactgtgatccatgta |
200 |
Q |
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| T |
10088629 |
tgacaatattttctacataaattaaatactgtattgcggaacaatagcgatttgtttaaattctgctacgccatagcgttatagcactgtgatccattta |
10088728 |
T |
|
| Q |
201 |
ttcttgtttggtacattttggactatggaaaagtgcaa |
238 |
Q |
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| T |
10088729 |
ttcttgtttggtacattttggactatggaaaagtgcaa |
10088766 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 55469965 - 55470013
Alignment:
| Q |
137 |
cggaacaatagcgatttgtttaaattctgctacaccatagcgctatagc |
185 |
Q |
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| T |
55469965 |
cggaacaatagcggtttgtttaaattccgctacactatagcggtatagc |
55470013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 27743176 - 27743125
Alignment:
| Q |
136 |
gcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagcac |
187 |
Q |
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| T |
27743176 |
gcggaacaatagcaatttgttaaaattctgacacacgatagcgctatagcac |
27743125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 7108314 - 7108269
Alignment:
| Q |
11 |
agtgtcgttaactgtgggtagcggaaaatagcagtttgttcaaatt |
56 |
Q |
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| T |
7108314 |
agtgttgttaatcgtggatagcggaaaatagcagtttgttcaaatt |
7108269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 42581908 - 42581863
Alignment:
| Q |
139 |
gaacaatagcgatttgtttaaattctgctacaccatagcgctatag |
184 |
Q |
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| T |
42581908 |
gaacaagagcgatttgttggaattctgctacatcatagcgctatag |
42581863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 21891050 - 21891005
Alignment:
| Q |
124 |
aaatactgtattgcggaacaatagcgatttgtttaaattctgctac |
169 |
Q |
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| T |
21891050 |
aaatattgtattgtggaacaatagcaatttgttgaaattctgctac |
21891005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 32427143 - 32427188
Alignment:
| Q |
132 |
tattgcggaacaatagcgatttgtttaaattctgctacaccatagc |
177 |
Q |
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||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
32427143 |
tattgcggaacaataatggtttgttcaaattctgctacaccatagc |
32427188 |
T |
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