View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_high_5 (Length: 424)
Name: NF2521_high_5
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 397
Target Start/End: Complemental strand, 39945621 - 39945232
Alignment:
| Q |
3 |
gatgtcgaagaatattcatatcggtctttttaaggagtgtttcaggacacttcttaaatattataaaatataaataattattctttataaagttaagtat |
102 |
Q |
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| T |
39945621 |
gatgttgaataatagtcatatcggtctttttaaggagtgtttcatgacacttcttaaat--tataaaatataagcaattattttttataaagtaaagtat |
39945524 |
T |
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| Q |
103 |
tttatgttagagtcttcgaaagtactacctcttgttttattgcgacaagactatcttcaccggtttggttaaccttaatattataaaataagtaattatt |
202 |
Q |
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| T |
39945523 |
tttatgtcagagtcttcgaaagtactacctcttgttttattgcgacaagactatcttcaccggtttggttaaccttaatattataaaataagtaattatt |
39945424 |
T |
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| Q |
203 |
cgttaaaaagtcaaatattccatgtcagagtgttcgaaagtcctactcctcttttattgtgacaagactatgttcatcagtttggttaaccttctctcag |
302 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
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| T |
39945423 |
cgttaaaaggtcaaatattccatgtcagagtgtttgaaagtactactcctcttttattgtgacaatattatgttcatcagtttggttaaccttctctcgg |
39945324 |
T |
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| Q |
303 |
tctattgagatcgccttgtaatttccattataggtagtaaatagttttcttttcacggtcatgaagtgaattttattagctccaatattcaattt |
397 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39945323 |
tctattgagatcgccttgtaatttccattatag---gtaaatagttttcttttcacggtcatgaagtgaattttattagctccaatattcaattt |
39945232 |
T |
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