View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2521_high_7 (Length: 347)
Name: NF2521_high_7
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 35057664 - 35057373
Alignment:
| Q |
1 |
ttatatctggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35057664 |
ttatatctggaattatagcacaaagtt-ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgc |
35057566 |
T |
|
| Q |
101 |
catccaaaaatgaagtttcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35057565 |
catccaaaaatgaagtttcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttt |
35057466 |
T |
|
| Q |
201 |
tcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacacacagggtaccg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
35057465 |
tcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtatatggaaaacacacggagtaccg |
35057373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 43017780 - 43017501
Alignment:
| Q |
8 |
tggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaa |
107 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| | || || |||||| |
|
|
| T |
43017780 |
tggaattatagcacaaagtta-tgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaa |
43017683 |
T |
|
| Q |
108 |
aaatgaagtt-----------------tcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaa |
190 |
Q |
| |
|
|||| | || ||||||||||||| | |||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
43017682 |
aaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaa |
43017583 |
T |
|
| Q |
191 |
gctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacaca |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
43017582 |
gctgaatttttcataaaatattagaataagtcttgccctatat-----------gtgactcattcaaaagctgaattgtgcatgcaaaacaca |
43017501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 35057347 - 35057310
Alignment:
| Q |
293 |
gagtgtacagtagaagttcccaatttctaaaccttcct |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35057347 |
gagtgtacggtagaagttcccaatttctaaaccttcct |
35057310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 38569811 - 38569754
Alignment:
| Q |
57 |
attttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||| |
|
|
| T |
38569811 |
attttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaatgaa |
38569754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 14328983 - 14329066
Alignment:
| Q |
183 |
tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt |
267 |
Q |
| |
|
|||||||| ||||||||| || ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
14328983 |
tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt |
14329066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 14421993 - 14422076
Alignment:
| Q |
183 |
tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt |
267 |
Q |
| |
|
|||||||| ||||||||| || ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
14421993 |
tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt |
14422076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 8253278 - 8253314
Alignment:
| Q |
227 |
cctatatttatgctttgagtgactcattcaaaagctg |
263 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8253278 |
cctatatttatgctttgagtagctcattcaaaagctg |
8253314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University