View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_low_11 (Length: 341)
Name: NF2521_low_11
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 19330994 - 19331305
Alignment:
| Q |
15 |
gacataaactagtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19330994 |
gacataaactagtcttgtaataatgaaggaaagagaaaaagagatgatcgaaagttatagataaaggttattttagtaaaactaaaattatttagcagtg |
19331093 |
T |
|
| Q |
115 |
cttaacggctgtttaactgaaatatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaataggaggggagg |
214 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19331094 |
cttaacggctgtttaactgaaatataaaaaaatggatcaaaatgtatcaaaaatcatctgttgggggaggataatgtgtgtttcaaaataggaggggagg |
19331193 |
T |
|
| Q |
215 |
ggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttattaatccataatgtttaactgtcctcctcgtgaacttaggtcagttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19331194 |
ggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttattaatccataatgtttaactgtcctcctcgtgaacttaggtcagttg |
19331293 |
T |
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| Q |
315 |
gttggacaatgc |
326 |
Q |
| |
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|||||||||||| |
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| T |
19331294 |
gttggacaatgc |
19331305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 54269762 - 54269518
Alignment:
| Q |
15 |
gacataaactagtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtg |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||| || || |
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| T |
54269762 |
gacataaactagtcttgtaataataaaggaaagagaaaaagagatgatcgaaagttatatataaaggttattttagtaatactaaaattatttaacaatg |
54269663 |
T |
|
| Q |
115 |
cttaacggctgtttaactgaaatatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaataggaggggagg |
214 |
Q |
| |
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|||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54269662 |
gttaacggctgtttaacggaaatataaaaaaatggatcaaaatgtatcaaaaatcatatgttgggggaggataatgtgtgtttcaaaataggagaggagg |
54269563 |
T |
|
| Q |
215 |
ggagtgtaaaagtagcatctctcaggggagggggatgtaatttactc |
261 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54269562 |
ggagtgtaaaagtagcatctctcaggg--atgggatgtaatttactc |
54269518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 2559184 - 2559408
Alignment:
| Q |
25 |
agtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtgcttaacggct |
124 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
2559184 |
agtcttgtaataatgaaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttagtaatactaaaattatttaacagtgcttaacggct |
2559283 |
T |
|
| Q |
125 |
gtttaactgaaatatnnnnnnntggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaataggaggggaggggagtgtaaa |
224 |
Q |
| |
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||||||| |||||| || |||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2559284 |
gtttaacgaaaatat----------aaaaaaatgtatcaaaaatcatctgttgagagaggataatgtgtgttttaaaataggaggggaggggagtgtaaa |
2559373 |
T |
|
| Q |
225 |
agtagcatctctcaggggagggggatgtaatttact |
260 |
Q |
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|||||||||||| |||||||||||||| |||||||| |
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| T |
2559374 |
agtagcatctctgaggggagggggatg-aatttact |
2559408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 10056050 - 10056128
Alignment:
| Q |
180 |
ggaggataatgtgtgtttcaaaataggaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaattta |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||||| |
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| T |
10056050 |
ggaggataatgtgtgtttcaaaatagaagggaaggggaatgtaaaagtagcatctctctagagagggggatgtaattta |
10056128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 10055921 - 10056001
Alignment:
| Q |
40 |
aaggaaagagaaaaagagatgaccgaaagttatagataaaggttattttactaaaactaaaattatttagcagtgcttaac |
120 |
Q |
| |
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|||||||||||||||| ||||| || |||| | |||||||| ||||||| ||| |||||| ||||||| | ||||||||| |
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| T |
10055921 |
aaggaaagagaaaaagcaatgacagagagttgttgataaaggctattttagtaatactaaatttatttaacggtgcttaac |
10056001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 11205774 - 11205894
Alignment:
| Q |
147 |
tggaacaaaatgtatcaaaaatcagctgttgggggaggataatgtgtgtttcaaaata----ggaggggaggggagtgtaaaagtagcatctctca-ggg |
241 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||| ||| |
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| T |
11205774 |
tggatcaaaatgtatcaaaaatcatctttcaagggaggataatgtgtgtttcaaaatatatagaatgggaggggaatgtaaaagcagcatctttcaaggg |
11205873 |
T |
|
| Q |
242 |
gagggggatgtaatttactct |
262 |
Q |
| |
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| ||| ||||||||||||||| |
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| T |
11205874 |
gtgggagatgtaatttactct |
11205894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 1263083 - 1263145
Alignment:
| Q |
206 |
gaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactctacttat |
268 |
Q |
| |
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|||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||| |
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| T |
1263083 |
gaggggaggggagtgtaattcaagcatctttgaggggaggggaatgtaatttactctatttat |
1263145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 39574938 - 39574991
Alignment:
| Q |
207 |
aggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactc |
261 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||| |||||||||||| |
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|
| T |
39574938 |
aggggaggggaatgtaaaaagagcatctctcagggaaggggg-tgtaatttactc |
39574991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 44284375 - 44284432
Alignment:
| Q |
206 |
gaggggaggggagtgtaaaagtagcatctctcaggggagggggatgtaatttactcta |
263 |
Q |
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|||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
44284375 |
gaggggaggggagtgtaattcaagcatctcttaggggaggggagtgtaatttactcta |
44284432 |
T |
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