View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_low_12 (Length: 335)
Name: NF2521_low_12
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 44066994 - 44066676
Alignment:
| Q |
1 |
tcaatgtcacgtaacgtaaggtgtccatggtatgaaggcttacgtacccaaaacaaacggctaagataaaggttgcaccaggaatgaaattgtacatgac |
100 |
Q |
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| T |
44066994 |
tcaatgtcacgtaacgtaaggtgtccatggtatgaaggcttacgtacccaaaacaaacggctaagataaaggttgcagcaggaatgaaattgtacatgac |
44066895 |
T |
|
| Q |
101 |
tgtagcatatgttacacctgccaaaaccactgcttcaacgtataaattttgttgtaaggttgccctgaatgatccatgttgcaaatgttaagat-nnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44066894 |
tgtagcatatgttacacctgccaaaaccactacttcaacgtataaattttgttgtaaggttgccctgaatgatccatgttgcaaatgttaagataaaata |
44066795 |
T |
|
| Q |
200 |
nnnnnnnnttatacacataaaatgatattgaatcaactaacccaaataatccacaaagaaatgcttgaaaaagaacttcagctgtgatctttggattgct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44066794 |
aaataaaattatacacataaaatgatattgaatcaactaacccaaataatccacaaagaaatgcttgaaaaagaacttcagctgtgatctttgggttgct |
44066695 |
T |
|
| Q |
300 |
cttcctgttgaattaaaaa |
318 |
Q |
| |
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||||||||||||||||||| |
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| T |
44066694 |
cttcctgttgaattaaaaa |
44066676 |
T |
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