View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_low_15 (Length: 304)
Name: NF2521_low_15
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_15 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 39794205 - 39794494
Alignment:
| Q |
16 |
gatacatcaaatcaccatgatccagctagtattcaaaaacttttgacagaaacagctaacatgaagtttatggattctgcaaataatcattgcttggctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794205 |
gatacatcaaatcaccatgatccagctagtattcaaaaacttttgacagaaacagctaacatgaagtttatggattctgcaaataatcattgcttggctt |
39794304 |
T |
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| Q |
116 |
ctcaaaacttgagtaacnnnnnnn-ggtaccgaacattttttattttgactttgcgcatgttttacttggtttaattctaaggcaagacttttagaaaac |
214 |
Q |
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| T |
39794305 |
ctcaaaacttgagtaacaaaaaaaaggtaccgaacattttttattttgactttgcgcatgttttacttggtttaattctaaggcaagacttttagaaaac |
39794404 |
T |
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| Q |
215 |
ccttcccctccattcccccacaaaacataaaaacctgggtatgcacgttctttgcatacgtataagtaacataaagttgttatttcctta |
304 |
Q |
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| T |
39794405 |
ccttcccctccattcccccacaaaacataaaaacctgggtatgcatgttctttgcatacgtataagtaacataaagttgttatttcctta |
39794494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 39789480 - 39789590
Alignment:
| Q |
15 |
agatacatcaaatcaccatgatccagctagtattcaaaaacttttgacagaaacagctaacatgaagtttatggattctgcaaataatcattgcttggct |
114 |
Q |
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|||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||| || |
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| T |
39789480 |
agatacatcagatctccatgatccagccagtatccaaaaacttttgacagaaacagctagcacgaagttcatggattctgcagataatcattgcttgcct |
39789579 |
T |
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| Q |
115 |
tctcaaaactt |
125 |
Q |
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|||||| |||| |
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| T |
39789580 |
tctcaagactt |
39789590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 39783028 - 39783145
Alignment:
| Q |
15 |
agatacatcaaatcaccatgatccagctagtattcaaaaacttttgacagaaacagctaacatgaagtttatggattctgcaaataatcattgcttggct |
114 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||| ||||| |
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| T |
39783028 |
agatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtggct |
39783127 |
T |
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| Q |
115 |
tctcaaaacttgagtaac |
132 |
Q |
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|||||| |||| |||||| |
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| T |
39783128 |
tctcaagacttaagtaac |
39783145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 39783268 - 39783378
Alignment:
| Q |
185 |
tttaattctaaggcaagacttttagaaaaccc-ttcc-cctccattcccccacaaaacataaaaacctgggtatgcacgttctttgcatacgtataagta |
282 |
Q |
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||||||||||||||| ||||| |||||||||| |||| |||||| | |||||||| |||||||| || |||||||| |||||||||||| |||||||| |
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| T |
39783268 |
tttaattctaaggcaggacttgtagaaaaccccttccgcctccaattccccacaa--cataaaaatcttggtatgcatgttctttgcatatttataagta |
39783365 |
T |
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| Q |
283 |
acataaagttgttat |
297 |
Q |
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| T |
39783366 |
ac--aaagttgttat |
39783378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 39776377 - 39776448
Alignment:
| Q |
33 |
tgatccagctagtattcaaaaacttttgacagaaacagctaacatgaagtttatggattctgcaaataatca |
104 |
Q |
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||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
39776377 |
tgatccaactagtatccaaaaacttttgaaggaaacagctagcatgaagttcatggattctgccgataatca |
39776448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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