View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2521_low_2 (Length: 654)

Name: NF2521_low_2
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2521_low_2
NF2521_low_2
[»] chr8 (12 HSPs)
chr8 (1-641)||(13807822-13808462)
chr8 (473-641)||(3267642-3267806)
chr8 (158-459)||(3267892-3268205)
chr8 (459-566)||(3287044-3287151)
chr8 (459-566)||(13787007-13787114)
chr8 (1-69)||(3408404-3408472)
chr8 (459-529)||(7165211-7165281)
chr8 (394-443)||(3325705-3325754)
chr8 (385-460)||(3263251-3263326)
chr8 (459-513)||(3325563-3325617)
chr8 (459-535)||(3407883-3407959)
chr8 (459-499)||(31175408-31175448)
[»] chr2 (1 HSPs)
chr2 (459-506)||(14767511-14767558)
[»] chr5 (2 HSPs)
chr5 (473-509)||(20811855-20811891)
chr5 (473-509)||(20838210-20838246)


Alignment Details
Target: chr8 (Bit Score: 617; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 13807822 - 13808462
Alignment:
Q  1 gcgtagtcgattgtggtcttatgaggatgtacatgatgttttgaatcaaaatagtgtaagaactttctctacatcaaatttgaatgaaacttctgatctt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13807822 gcgtagtcgattgtggtctgatgaggatgtacatgatgttttgaatcaaaattgtgtaagaactttctctacttcaaatttgaatgaaacttctgatctt 13807921  T
Q  101 cctccatcaccttttcaagattctttgtttatttgtaattatatcactcttattaatatattggctgcaaattgttggacacatgatctgagtgtgtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13807922 cctccatcaccttttcaagattctttgtttatttgtaattatatcactcttattaatatattggctgtaaattgttggacacatgatctgagtgtgtttg 13808021  T
Q  201 cattgtcgtgttcatttgttcattacaagtacgtttgagatgctcctttgcagcattttgtatcattttctaacaagcaaacataaaaggggtttcccct 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13808022 cattgtcatgttcatttgttcattacaagtacgtttgagatgctcctttgcagcattttgtatcattttctaacaagcaaacataaaaggggtttcccct 13808121  T
Q  301 tctaatctcgatcttttctttacatgtagggaacaaaatttgtggaaggattggttttgaagtcccaaagcaccgaaaatgttagcttcaatgctgattc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13808122 tctaatctcgatcttttctttacatgtagggaacaaaatttgtggaaggattggttttgaagtcccaaagcaccgaaaatgttagcttcaatgctgattc 13808221  T
Q  401 tttcaagaagatgaacaatttgagacttttgcaacttgatcatgttgatcttactggagacttttatcaggaaaatctagttgtttttgagttaaaacac 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13808222 tttcaagaagatgaacaatttgagacttttgcaacttgatcatgttgatcttactggagacttttatcaggaaaatctagctgtttttgagttaaaacac 13808321  T
Q  501 agcaatattaaactggtctggaatgaaactaaggtgtgatgtaaatattttctttagaaactaaaatttgatgactataataattgttgcaaccattaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13808322 agcaatattaaactggtctggaatgaaactaaggtgtgatgtaaatattttctttagaaactaaaatttgatgactataataattgttgcaaccattaat 13808421  T
Q  601 ttcatttttattttaaacatttatctttttgcagttgatga 641  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13808422 ttcatttttattttaaacatttatctttttgcagttgatga 13808462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 473 - 641
Target Start/End: Complemental strand, 3267806 - 3267642
Alignment:
Q  473 aaatctagttgtttttgagttaaaacacagcaatattaaactggtctggaatgaaactaaggtgtgatgtaaatattttctttagaaactaaaatttgat 572  Q
    ||||||||||||||||||||| |||||||||||||||||||  || ||||||||||| |||||||||| |||||||||| ||| ||||||| |||||||     
T  3267806 aaatctagttgtttttgagttgaaacacagcaatattaaacaagtttggaatgaaaccaaggtgtgatataaatattttattttgaaactataatttga- 3267708  T
Q  573 gactataataattgttgcaaccattaatttcatttttattttaaacatttatctttttgcagttgatga 641  Q
       |||| | ||||||||  ||||||||||| | ||||||| ||||||||||| |||||||||||||||    
T  3267707 ---tatagttattgttgccgccattaatttcttatttatttgaaacatttatcattttgcagttgatga 3267642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 158 - 459
Target Start/End: Complemental strand, 3268205 - 3267892
Alignment:
Q  158 atattggctgcaaattgttggacacatgatctgagtgtgtttgcattgtcgtgttcatttgttcattacaagtacgtttgagatgctccttt-------- 249  Q
    ||||| ||||||||||||||||  | |||| ||||||||||||||||||| |||||| ||| |||||||||  ||||||| ||||||||| |            
T  3268205 atattagctgcaaattgttggatgcgtgatatgagtgtgtttgcattgtcatgttcaattgctcattacaatcacgtttgggatgctcctctattataga 3268106  T
Q  250 -gc-----agcattttgtatcattttctaacaagcaaacataaaaggggtttccccttctaatctcgatcttttctttacatgtagggaacaaaatttgt 343  Q
     ||     ||| |||| ||  | ||||||| ||||||||| ||||     ||||||||| |||||| || ||||||| ||||  | |||||| ||  |||    
T  3268105 ggctctatagctttttctagtactttctaagaagcaaacaaaaaa--taattccccttccaatctctattttttcttcacatacatggaacagaaactgt 3268008  T
Q  344 ggaaggattggttttgaagtcccaaagcaccgaaaatgttagcttcaatgctgattctttcaagaagatgaacaatttgagacttttgcaacttgatcat 443  Q
    ||||||||||||||||| ||| |||| |||| |  ||||| || || |  || || | |||||| ||||||| ||||||||||||||  ||||| |||||    
T  3268007 ggaaggattggttttgatgtcgcaaaacaccaacgatgtttgcatcgagactaataccttcaaggagatgaagaatttgagacttttaaaacttcatcat 3267908  T
Q  444 gttgatcttactggag 459  Q
    ||||||||||||||||    
T  3267907 gttgatcttactggag 3267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 566
Target Start/End: Complemental strand, 3287151 - 3287044
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaatattaaactggtctggaatgaaactaaggtgtgatgtaaatattttctttaga 558  Q
    |||||| |||| | |||||||||||||||||| |||||||||||||| |||||||  || |||||| |||| ||||| | || | || ||||||||| ||    
T  3287151 gactttcatcaaggaaatctagttgtttttgaattaaaacacagcaacattaaacaagtatggaataaaaccaaggtataatattaacattttcttttga 3287052  T
Q  559 aactaaaa 566  Q
    | ||||||    
T  3287051 atctaaaa 3287044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 566
Target Start/End: Original strand, 13787007 - 13787114
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaatattaaactggtctggaatgaaactaaggtgtgatgtaaatattttctttaga 558  Q
    |||||| |||| | |||||||||||||||||| |||| |||||||||||||||||  || ||||| ||||| ||||| | |  | || ||||||||| ||    
T  13787007 gactttcatcaaggaaatctagttgtttttgaattaacacacagcaatattaaacacgtatggaacgaaaccaaggtataaaattaacattttcttttga 13787106  T
Q  559 aactaaaa 566  Q
    ||||||||    
T  13787107 aactaaaa 13787114  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3408472 - 3408404
Alignment:
Q  1 gcgtagtcgattgtggtcttatgaggatgtacatgatgttttgaatcaaaatagtgtaagaactttctc 69  Q
    ||||||||||||||||| | | |||||||||||||||||||||    |||||| |||||||||||||||    
T  3408472 gcgtagtcgattgtggtttcacgaggatgtacatgatgttttggcaaaaaatactgtaagaactttctc 3408404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 7165281 - 7165211
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaatattaaactggtctggaatgaaac 529  Q
    ||||||||||||||||| || |||| ||| || |||||||||||||| |||||||  || |||||||||||    
T  7165281 gacttttatcaggaaaaccttgttgctttagacttaaaacacagcaaaattaaacaagtttggaatgaaac 7165211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 3325754 - 3325705
Alignment:
Q  394 ctgattctttcaagaagatgaacaatttgagacttttgcaacttgatcat 443  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  3325754 ctgattctttcaaggagatgaagaaactgagacttttgcaacttgatcat 3325705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 460
Target Start/End: Complemental strand, 3263326 - 3263251
Alignment:
Q  385 gcttcaatgctgattctttcaagaagatgaacaatttgagacttttgcaacttgatcatgttgatcttactggaga 460  Q
    |||||| |||||||||||||||| | ||||| ||| |||||||| | ||||||||| |||| || || ||||||||    
T  3263326 gcttcagtgctgattctttcaaggaaatgaagaatctgagacttctacaacttgataatgtggacctgactggaga 3263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 3325617 - 3325563
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaatattaaac 513  Q
    |||||||| |||||||||||||||||  ||||| |||||||||||| ||| ||||    
T  3325617 gacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaac 3325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 3407959 - 3407883
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaatattaaactggtctggaatgaaactaaggt 535  Q
    |||||| ||||||||||||| |||| |||||| |||||| | |||||| ||||||  || ||||| ||||| |||||    
T  3407959 gactttgatcaggaaaatctcgttgcttttgaattaaaatatagcaatgttaaacaagtttggaaggaaaccaaggt 3407883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 31175408 - 31175448
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaaca 499  Q
    |||||| ||| ||||||||||||||||||||| ||||||||    
T  31175408 gactttgatctggaaaatctagttgtttttgaattaaaaca 31175448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 14767558 - 14767511
Alignment:
Q  459 gacttttatcaggaaaatctagttgtttttgagttaaaacacagcaat 506  Q
    ||||||||||||||||||||||||| ||||||| ||||| | ||||||    
T  14767558 gacttttatcaggaaaatctagttgcttttgagctaaaatatagcaat 14767511  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 20811855 - 20811891
Alignment:
Q  473 aaatctagttgtttttgagttaaaacacagcaatatt 509  Q
    |||||||||||||||||| |||||||| |||||||||    
T  20811855 aaatctagttgtttttgaattaaaacatagcaatatt 20811891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 20838210 - 20838246
Alignment:
Q  473 aaatctagttgtttttgagttaaaacacagcaatatt 509  Q
    |||||||||||||||||| |||||||| |||||||||    
T  20838210 aaatctagttgtttttgaattaaaacatagcaatatt 20838246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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