View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_low_25 (Length: 249)
Name: NF2521_low_25
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_25 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 35058390 - 35058152
Alignment:
| Q |
9 |
gaagcataggtgaagaacaacaacaactttaccgttggaaggatttttagggaaattttatttgatggcatatttcaattattttgccaatgtaannnnn |
108 |
Q |
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| T |
35058390 |
gaagcataggtgaagagcaacaacaactttaccgttggaaggatttttagggaaattttatttgatggcatatttcaattattttgccaatgtaatttgt |
35058291 |
T |
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| Q |
109 |
nnnnnnnnnnggagttcaatcgacattgtaattttatgtttcttcaattcaatgaaaagtttacnnnnnnnaattcaaattcgtctcttcctttttctat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
35058290 |
tttttttt--ggagttcaatcgacattgtaattttatgtttcttcaattcaatgaaaagttaactttttttaattcaaattcgtctcttcctttttctat |
35058193 |
T |
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| Q |
209 |
ttctttccatcagtccttcataatttatgatttaaatttta |
249 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
35058192 |
ttctgtccatcagtccttcataatttatgatttaaatttta |
35058152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 43019729 - 43019506
Alignment:
| Q |
27 |
aacaacaactttaccgttggaaggatttttagggaaattttatttgatggcatatttcaattattttgccaatgtaannnnnnnnnnnnnnngg--agtt |
124 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |
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| T |
43019729 |
aacaacaactgtaccgttggaaggatttttagggaaatttgatttgatggcatatttcaattattttgccactgtaatttgtttttcttttttttaagta |
43019630 |
T |
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| Q |
125 |
caatcgacattgtaattttatgtttcttcaattcaatgaaaagtttacnnnnnnnaattcaaattcgtctcttcctttttctatttctttccatcagtcc |
224 |
Q |
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| T |
43019629 |
caatcgacattgtaattttacgtttcttcaattcaatgaaa-gtttacttttttaaattcaaattcgtctcttcctttttctatttctgtccttcactcc |
43019531 |
T |
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| Q |
225 |
ttcataatttatgatttaaatttta |
249 |
Q |
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|||||| |||||||||||||||||| |
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| T |
43019530 |
ttcatattttatgatttaaatttta |
43019506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 42807668 - 42807628
Alignment:
| Q |
125 |
caatcgacattgtaattttatgtttcttcaattcaatgaaa |
165 |
Q |
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| T |
42807668 |
caatcgacattgtaattttatgtttgttcaattcaatgaaa |
42807628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 42807726 - 42807686
Alignment:
| Q |
63 |
attttatttgatggcatatttcaattattttgccaatgtaa |
103 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| |
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| T |
42807726 |
atttgatttgatggcataattcaattattttgccaatgtaa |
42807686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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