View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2521_low_26 (Length: 249)

Name: NF2521_low_26
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2521_low_26
NF2521_low_26
[»] chr3 (1 HSPs)
chr3 (27-75)||(43881407-43881455)
[»] chr2 (2 HSPs)
chr2 (187-224)||(39341215-39341252)
chr2 (183-212)||(44458489-44458518)
[»] chr7 (1 HSPs)
chr7 (191-240)||(12110254-12110303)
[»] chr5 (1 HSPs)
chr5 (191-235)||(37914648-37914692)
[»] chr1 (2 HSPs)
chr1 (182-226)||(1510476-1510519)
chr1 (191-235)||(35058904-35058948)


Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 43881407 - 43881455
Alignment:
Q  27 aaaacttgagtacctgatagtcattccatgaccttgtcatctcttcata 75  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  43881407 aaaacttgagtacctgataatcattccataaccttgtcatctcttcata 43881455  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 39341252 - 39341215
Alignment:
Q  187 aggtcctgtttggataaacagcttaatttgtaacttat 224  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39341252 aggtcctgtttggataaacagcttaatttgtagcttat 39341215  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 44458518 - 44458489
Alignment:
Q  183 actaaggtcctgtttggataaacagcttaa 212  Q
    ||||||||||||||||||||||||||||||    
T  44458518 actaaggtcctgtttggataaacagcttaa 44458489  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 12110254 - 12110303
Alignment:
Q  191 cctgtttggataaacagcttaatttgtaacttatagaatatgcacctatg 240  Q
    ||||||| |||||||||||||||||| ||||||||| ||| |||| ||||    
T  12110254 cctgtttcgataaacagcttaatttgcaacttatagcataagcacttatg 12110303  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 37914648 - 37914692
Alignment:
Q  191 cctgtttggataaacagcttaatttgtaacttatagaatatgcac 235  Q
    |||||||||||||||||||||||||||| ||| ||| ||| ||||    
T  37914648 cctgtttggataaacagcttaatttgtagcttctagcataagcac 37914692  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 1510519 - 1510476
Alignment:
Q  182 aactaaggtcctgtttggataaacagcttaatttgtaacttatag 226  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||    
T  1510519 aactaaggacctgtttggataaacagctt-atttgtatcttatag 1510476  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 35058948 - 35058904
Alignment:
Q  191 cctgtttggataaacagcttaatttgtaacttatagaatatgcac 235  Q
    ||||||||||||||||||||| |||| ||||||||| ||| ||||    
T  35058948 cctgtttggataaacagcttattttgcaacttatagcataagcac 35058904  T

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