View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2521_low_29 (Length: 236)

Name: NF2521_low_29
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2521_low_29
NF2521_low_29
[»] chr4 (1 HSPs)
chr4 (1-231)||(53351257-53351487)
[»] chr5 (8 HSPs)
chr5 (25-167)||(26033203-26033349)
chr5 (42-166)||(38447439-38447566)
chr5 (59-225)||(38180922-38181079)
chr5 (59-225)||(38190052-38190209)
chr5 (59-225)||(38208146-38208303)
chr5 (59-225)||(38217277-38217434)
chr5 (59-225)||(38456282-38456439)
chr5 (181-225)||(26033157-26033201)
[»] chr1 (2 HSPs)
chr1 (25-110)||(38342704-38342790)
chr1 (25-110)||(38446897-38446983)
[»] chr6 (1 HSPs)
chr6 (25-109)||(4121599-4121684)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 53351487 - 53351257
Alignment:
Q  1 catgttcttgtatgttcttgagcgttaatttgtattctttcttttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaaga 100  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53351487 catgttattgtattttcttgatcgttaatttgtattctttcttttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaaga 53351388  T
Q  101 aaaagaaaacttgaaaagcgtatgtcaccctttcctgacaagatggaactgaatgatgagttgaataaaaatggttcaaatagccaacaagttaaggatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53351387 aaaagaaaacttgaaaagcgtatgtcaccctttcctgacaagatggaactgaatgatgagttgaataaaagtggttcaaatagccaacaagttaaggatt 53351288  T
Q  201 cacaagatgatgaatttaatataccgcaagt 231  Q
    |||||||||||||||||||||||||||||||    
T  53351287 cacaagatgatgaatttaatataccgcaagt 53351257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 26033349 - 26033203
Alignment:
Q  25 ttaatttgtattctttctttt-gtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt-- 121  Q
    ||||||||||||| ||||||| |||  |||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||      
T  26033349 ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtgg 26033250  T
Q  122 -atgtcaccctttcctgacaagatggaactgaatgatgagttgaata 167  Q
      |||||||||| |||||||| ||||||||| |||||||| ||||||    
T  26033249 cttgtcacccttccctgacaacatggaactggatgatgagctgaata 26033203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 38447439 - 38447566
Alignment:
Q  42 ttttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt---atgtcaccctttcctga 138  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||| | ||||| ||    |||||||||| |||||    
T  38447439 ttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaacataaaaagtgtggcttgtcacccttccctga 38447538  T
Q  139 caagatggaactgaatgatgagttgaat 166  Q
    ||| ||||||||| ||||||||||||||    
T  38447539 caacatggaactggatgatgagttgaat 38447566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 38180922 - 38181079
Alignment:
Q  59 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagc---gtatgtcaccctttcctgacaagatggaactgaatg 155  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |  |||||||||| || ||||| ||||||| | ||     
T  38180922 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatggaaccggatc 38181021  T
Q  156 atgagttgaataaaaatggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    || ||||||||            | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38181022 ataagttgaat------------agtagccaacaagttgaggattcacaagaagatgaatttaatatacc 38181079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 38190209 - 38190052
Alignment:
Q  59 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagc---gtatgtcaccctttcctgacaagatggaactgaatg 155  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |  |||||||||| || ||||| ||||||| | ||     
T  38190209 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatggaaccggatc 38190110  T
Q  156 atgagttgaataaaaatggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    || ||||||||            | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38190109 ataagttgaat------------agtagccaacaagttgaggattcacaagaagatgaatttaatatacc 38190052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 38208146 - 38208303
Alignment:
Q  59 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagc---gtatgtcaccctttcctgacaagatggaactgaatg 155  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |  |||||||||| || ||||| ||||||| | ||     
T  38208146 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatggaaccggatc 38208245  T
Q  156 atgagttgaataaaaatggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    || ||||||||            | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38208246 ataagttgaat------------agtagccaacaagttgaggattcacaagaagatgaatttaatatacc 38208303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 38217434 - 38217277
Alignment:
Q  59 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagc---gtatgtcaccctttcctgacaagatggaactgaatg 155  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |  |||||||||| || ||||| ||||||| | ||     
T  38217434 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatggaaccggatc 38217335  T
Q  156 atgagttgaataaaaatggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    || ||||||||            | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38217334 ataagttgaat------------agtagccaacaagttgaggattcacaagaagatgaatttaatatacc 38217277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 38456282 - 38456439
Alignment:
Q  59 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagc---gtatgtcaccctttcctgacaagatggaactgaatg 155  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |  |||||||||| || ||||| ||||||| | ||     
T  38456282 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatggaaccggatc 38456381  T
Q  156 atgagttgaataaaaatggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    || ||||||||            | ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38456382 ataagttgaat------------agtagccaacaagttgaggattcacaagaagatgaatttaatatacc 38456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26033201 - 26033157
Alignment:
Q  181 tagccaacaagttaaggattcacaagatgatgaatttaatatacc 225  Q
    |||||||||| || ||||||||||||| ||||||||| |||||||    
T  26033201 tagccaacaaattgaggattcacaagaagatgaatttcatatacc 26033157  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 38342704 - 38342790
Alignment:
Q  25 ttaatttgtattctttctttt-gtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaac 110  Q
    ||||||||||||| ||||||| |||| || |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  38342704 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaac 38342790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 38446897 - 38446983
Alignment:
Q  25 ttaatttgtattctttctttt-gtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaac 110  Q
    ||||||||||||| ||||||| |||| || |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  38446897 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaac 38446983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 4121599 - 4121684
Alignment:
Q  25 ttaatttgtattctttct-tttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaa 109  Q
    |||||||| |||| |||| ||||||| |||| |||||||||   |||||||  |||||||| ||||||||||||||||||||||||    
T  4121599 ttaatttgcattcgttctctttgtgacagtttcctggaagatcagataatgctatcaagaacttttggaatgcaagaaaaagaaaa 4121684  T

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