View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2521_low_3 (Length: 517)
Name: NF2521_low_3
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 10231809 - 10231300
Alignment:
| Q |
1 |
aaattaaactctattacataaactcgcatgcttatgtgtgtagttaactttttggttacttttaattttacatgcataagaattctttttgcttctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231809 |
aaattaaactctattacataaactcgcatgcttatgtgtgtagttaactttttggttacttttaattttacatgcataagaattctttttgcttctctct |
10231710 |
T |
|
| Q |
101 |
ttcaatacgcgacagaaagatgacctcaagatggtggtctcgtatttaagaagtaccaaacaagtatctcgtataggtctctggggacgatcaatgggag |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231709 |
ttcaatatgcgacagaaagatgacctcaagatggtggtctcgtatttaagaagtaacaaacaagtatctcgtataggtctctggggacgatcaatgggag |
10231610 |
T |
|
| Q |
201 |
ctgtcactaggtatcacatcttctaccaacttgtttgattttggtaaaaatttatgttctatatatttata----aattgtacacaaacaaggaatgaaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10231609 |
ctgtcactaggtatcacatcttctaccaacttgtttgattttggtaaaaatttatgttctatatatttatattctaattgtacacaaacaaggaatgaaa |
10231510 |
T |
|
| Q |
297 |
tcaaagggccctcaataaaagaaaacaagnnnnnnnnnnnnnnnnnnnnnnnacctcaatgctgagccacctgtatgcaaaattctcctgtgtaatttga |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10231509 |
tcaaagggccctcaataaaagaaaacaagtttttcttttccttttactttttacctcaatgctgagccacctgtatgcaagattctcctgtgtaatttga |
10231410 |
T |
|
| Q |
397 |
cttcttattttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaacttgtacga |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231409 |
cttcttattttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaacttgtacga |
10231310 |
T |
|
| Q |
497 |
cttgatgatg |
506 |
Q |
| |
|
|||||||||| |
|
|
| T |
10231309 |
cttgatgatg |
10231300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 56247834 - 56247749
Alignment:
| Q |
405 |
tttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaactt |
490 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
56247834 |
tttgctttggtgggatttagccttctttatggagccgaagacccttctattgctggaatggtattggatagcgccttttctaactt |
56247749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University