View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2521_low_5 (Length: 490)
Name: NF2521_low_5
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2521_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 34145078 - 34144618
Alignment:
| Q |
15 |
aagaacagtacaatgtttcgcaatcaacaagtacaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacct |
114 |
Q |
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| T |
34145078 |
aagaacagtgcaatggttcgcaatcaacaagtaaaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaacaaaatctacct |
34144979 |
T |
|
| Q |
115 |
cgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttga |
214 |
Q |
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| T |
34144978 |
cgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttccttttcagtgttga |
34144879 |
T |
|
| Q |
215 |
aacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatttttaacatctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144878 |
aacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatttttaacatctt |
34144779 |
T |
|
| Q |
315 |
tttaaactgactgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatctcgaggattcaaccggtaagagatgg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34144778 |
tttaaactgactgcaggatcttccttctaagttaaatcctactatgtcattgttggttgatcagaaaatcaatcttgaggattcaaccggtaagagatgg |
34144679 |
T |
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| Q |
415 |
gttataacaatttcagaagttgatggttcttttgcttttaagaaaggatggggtgatttct |
475 |
Q |
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| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34144678 |
gctataacagtatcagaagttgatggttcttttgcttttaagaaaggatgggatgatttct |
34144618 |
T |
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