View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2521_low_6 (Length: 480)

Name: NF2521_low_6
Description: NF2521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2521_low_6
NF2521_low_6
[»] chr8 (7 HSPs)
chr8 (4-463)||(5268883-5269361)
chr8 (40-463)||(5276399-5276835)
chr8 (235-463)||(5249913-5250141)
chr8 (227-463)||(5272420-5272656)
chr8 (4-154)||(5249648-5249798)
chr8 (4-168)||(5272736-5272900)
chr8 (343-463)||(14944399-14944521)
[»] chr5 (1 HSPs)
chr5 (37-136)||(19569150-19569249)
[»] chr2 (5 HSPs)
chr2 (25-147)||(26315722-26315844)
chr2 (25-128)||(43110849-43110952)
chr2 (370-463)||(43110327-43110420)
chr2 (370-463)||(26314791-26314884)
chr2 (49-92)||(43105420-43105463)


Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 4 - 463
Target Start/End: Original strand, 5268883 - 5269361
Alignment:
Q  4 atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5268883 atgtctaataatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgt 5268982  T
Q  104 tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5268983 tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttaaaaatactctgtttttcattcac 5269082  T
Q  204 tcgatattctgaatatta-------------------acttgtgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaa 284  Q
    ||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5269083 tcgatattctgaatattatatttataacaaataattaacttgtgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaa 5269182  T
Q  285 agtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgagga 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5269183 agtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaatcagcttatgctttggggtgtgatttgagga 5269282  T
Q  385 ttgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctctgagattaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5269283 ttgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaa 5269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 40 - 463
Target Start/End: Complemental strand, 5276835 - 5276399
Alignment:
Q  40 aaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctc 139  Q
    ||||| || ||||||||||| |||||||||||| |  |||||||||| |||||||| ||||||||||||||||||||||| || |||||||  ||||||     
T  5276835 aaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctg 5276736  T
Q  140 tcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcactcgatattctgaatattaact------tgtg----- 228  Q
    | |||||||| |||| | || |||||| |||||||||||   ||||||||||||||||||||| | || |||||| ||  |  ||      ||||         
T  5276735 ttatggtatgctttttattcctttcatgtgctctgttttgtaaaatactctgtttttcattcatttgaaattctgcattgtctctaatatatgtgattaa 5276636  T
Q  229 --ttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaatt 326  Q
      |||||||||||||| |  |||||| ||||||||||||| ||||||||||||||| ||  || ||||| |||||||| |||||||||||||| ||||||    
T  5276635 ctttttggttttggaattgtaggacaaaatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaggttcttcaaaggattccaatt 5276536  T
Q  327 aatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttga 426  Q
     |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||| |||||| || |||||||    
T  5276535 catcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttga 5276436  T
Q  427 aggatttgggaattagtgaatgcttctctgagattaa 463  Q
    || |||| ||||| ||||||| |||| ||||||||||    
T  5276435 agcatttaggaataagtgaatacttcactgagattaa 5276399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 235 - 463
Target Start/End: Original strand, 5249913 - 5250141
Alignment:
Q  235 ttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacag 334  Q
    |||| ||| ||||||| || |||||||||||| ||||||||||||| ||||  || ||||| |||||||||||||||||||||||||||||| |||||||    
T  5249913 tttttgaattacaggataggatgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacag 5250012  T
Q  335 aataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttg 434  Q
    ||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||| |||||    
T  5250013 aataatacctgctattaaatcagcacatgcattagggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttg 5250112  T
Q  435 ggaattagtgaatgcttctctgagattaa 463  Q
    ||||| ||||||| |||| ||||||||||    
T  5250113 ggaataagtgaatacttcactgagattaa 5250141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 227 - 463
Target Start/End: Complemental strand, 5272656 - 5272420
Alignment:
Q  227 tgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaatt 326  Q
    ||||||||||||| || || |||||| ||||||||||||  |||||||||||||   ||  || ||||| |||||||| |||||||||||||| ||||||    
T  5272656 tgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatggtgtaaccattgaagagattgaaaaggttcttcaaaggattccaatt 5272557  T
Q  327 aatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttga 426  Q
     |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||| |||||| || |||||||    
T  5272556 catcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttga 5272457  T
Q  427 aggatttgggaattagtgaatgcttctctgagattaa 463  Q
    || ||||||||||||||||||||||||| ||||||||    
T  5272456 agcatttgggaattagtgaatgcttctcagagattaa 5272420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 5249648 - 5249798
Alignment:
Q  4 atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt 103  Q
    ||||| || ||||||||  ||||||| || || ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||    
T  5249648 atgtctaataatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt 5249747  T
Q  104 tcaatcaactccttcccactatgcctttcaattctctcatggtatgttttt 154  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  5249748 tcaatcagctccttcccactatgccttggaattctctcatggtatgttttt 5249798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 5272900 - 5272736
Alignment:
Q  4 atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt 103  Q
    ||||| || |||||||| ||  |||| ||||| || |||||||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||||||    
T  5272900 atgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgt 5272801  T
Q  104 tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatat 168  Q
    ||||||| ||||||||||| |||||||  |||||  ||||||||||||||| | ||| |||||||    
T  5272800 tcaatcagctccttcccacaatgccttggaattccgtcatggtatgttttttattctcttcatat 5272736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 463
Target Start/End: Original strand, 14944399 - 14944521
Alignment:
Q  343 ctgctattaaatcagcttatgctttagggtgtgatttgag-gattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaatta 441  Q
    |||| |||||||||||  ||||||||||||||||||||||  ||||| |||||||| |||  | ||| |||||| || ||||||||| |||||||||| |    
T  14944399 ctgcaattaaatcagcacatgctttagggtgtgatttgagttattgtgagcgatgccaatgtgttttacattgaaactattttgaagcatttgggaataa 14944498  T
Q  442 gtgaat-gcttctctgagattaa 463  Q
    ||||||  |||||| ||||||||    
T  14944499 gtgaatatcttctcagagattaa 14944521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 19569150 - 19569249
Alignment:
Q  37 gataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaatt 136  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  19569150 gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttcaatt 19569249  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 26315844 - 26315722
Alignment:
Q  25 gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta 124  Q
    ||||||||||| || |||||||| ||||| ||||| || ||||| |||||| ||||||||||||||||||  |||||||||||||||||| ||||||| |    
T  26315844 gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccacca 26315745  T
Q  125 tgcctttcaattctctcatggta 147  Q
    |||| || || | ||||||||||    
T  26315744 tgccattgaactatctcatggta 26315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 43110952 - 43110849
Alignment:
Q  25 gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta 124  Q
    ||||| ||||| || ||||||||| |||| ||||| |||||||| |||||| |||||||||| |||||||| |||||||||||| ||||  ||||||| |    
T  43110952 gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccacca 43110853  T
Q  125 tgcc 128  Q
    ||||    
T  43110852 tgcc 43110849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 463
Target Start/End: Complemental strand, 43110420 - 43110327
Alignment:
Q  370 ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctctgagattaa 463  Q
    ||||||||||||||||||| || ||||| || ||| |||||||||| |||||| ||||| |||| || ||||| ||||| ||||| ||||||||    
T  43110420 ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaa 43110327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 463
Target Start/End: Complemental strand, 26314884 - 26314791
Alignment:
Q  370 ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctctgagattaa 463  Q
    ||||||||||||||||||| || ||||| || ||  |||||||||| |||||| | ||| | || |||||||| ||||| ||||| ||||||||    
T  26314884 ggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaa 26314791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
Q  49 attgattgtgatagtgataattgggttcttgatgaattaggttt 92  Q
    ||||| ||||||||||||||||||||||||||||| || |||||    
T  43105463 attgaatgtgatagtgataattgggttcttgatgagtttggttt 43105420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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