View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2522_high_1 (Length: 428)
Name: NF2522_high_1
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2522_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4243590 - 4243321
Alignment:
| Q |
1 |
ataatgaatctaaaaagttcaatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4243590 |
ataatgaatctaaaaagttcaatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatatt |
4243491 |
T |
|
| Q |
101 |
aaaaattgaacaacaaaaatacaaagatagcataacaaaagagaagacaatggaacggggaaacttcatttcatgttctccatgcgtcagtgttgtcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4243490 |
aaaaattgaacaacaaaaatacaaagatagcataaaaaaagagaagacaatggaacggggaaacttcatttcatgttctccatgtgttagtgttgtcaaa |
4243391 |
T |
|
| Q |
201 |
ttgctctttaagacatggtggattatgtgtgaattatatccaccatgcctcttccatgggttgttttaatg |
271 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4243390 |
ttgctc-ttacgacatggtggattatgtgtgaattatatccaccatgcctcttccatgggttgttttaatg |
4243321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 4243220 - 4243121
Alignment:
| Q |
311 |
acacttagatacatagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggaggcaat |
410 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4243220 |
acacttagatacgtagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggagacaat |
4243121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 4250680 - 4250501
Alignment:
| Q |
55 |
atccttttggcttttattttgttacaaggagagtataatgaatattaaaaattgaacaaca---aaaatacaaagatagcataacaaaagagaagacaat |
151 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| | | |||||||||| | | | |||||||||||| ||||| |
|
|
| T |
4250680 |
atccttttgacttttattttgttacaagaggagtatagtgaatattaaaaattgaaagaaagaaaaaatacaaacaccgtagaacaaaagagaatacaat |
4250581 |
T |
|
| Q |
152 |
ggaacggggaaacttcatttcatgttctccatgcgtcagtgttgtcaaattgctctttaagacatggtggattatgtgtga |
232 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||| | ||| |||| |||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
4250580 |
ggaacgcggaaaattcatttcatgctctccacgtgtccgtgtcgtcaaattgcgc-ttaagacacggtggattatgtgtga |
4250501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 4250327 - 4250233
Alignment:
| Q |
313 |
acttagatacat-agttattgaatggattctaataaaaaagatgtaaaat-gtactacctcataagtaacaatccttccttcccgatgaagggag |
405 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4250327 |
acttagatacattagttattgaatgtattctaataaaaaagaaccaaaaaagtactacctcataagtagcaatacttccttcccgatgaagggag |
4250233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 3411141 - 3411205
Alignment:
| Q |
318 |
gatacatagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaat |
383 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
3411141 |
gatacttagttattgaatggatactaataaaag-gatggaaaatgtacaacctcataagtaacaat |
3411205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 3410736 - 3410828
Alignment:
| Q |
21 |
aatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatattaaaaattgaacaa |
113 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| | |||| ||| |||||||||| | ||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
3410736 |
aatgtatttagtctaaaaacacttaattttttggatcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaacaa |
3410828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University