View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2522_high_9 (Length: 223)
Name: NF2522_high_9
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2522_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 37850713 - 37850524
Alignment:
| Q |
17 |
aatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttccttccttctcctcgtttattagaaatccttttgtta |
116 |
Q |
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| T |
37850713 |
aatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggtcaggcagcttccttcctcctcctcgtttattagaaatccttttatta |
37850614 |
T |
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| Q |
117 |
agatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagt |
206 |
Q |
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| T |
37850613 |
agatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagtggtacagatatacatatcgaggatccaagt |
37850524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 28089731 - 28089639
Alignment:
| Q |
114 |
ttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagt |
206 |
Q |
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| T |
28089731 |
ttaagataaaaggcccttttcaattcatttctatggagatacatttgaattattatcaccagcacatcagaaatcaatattgaggatccaagt |
28089639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 37837241 - 37837188
Alignment:
| Q |
116 |
aagatcagaggtccttttcaattcatctctattgagatacattcgaattattat |
169 |
Q |
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| T |
37837241 |
aagataagaggcccctttcaattcatttctatggagatacattcgaaatattat |
37837188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 37837373 - 37837325
Alignment:
| Q |
17 |
aatataccgatcatttaggttctcagtagcctccaacacttgcttatga |
65 |
Q |
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| T |
37837373 |
aatatactgatcatttaggttctctgtagcctccaaaactagctcatga |
37837325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 36866067 - 36866009
Alignment:
| Q |
25 |
gatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttcctt |
83 |
Q |
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|||||||||||||||| ||||| ||||||||||| | ||||||| ||| |||||||||| |
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| T |
36866067 |
gatcatttaggttctctgtagcttccaacacttgatcatgaaggtcaggcagcttcctt |
36866009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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