View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2522_low_1 (Length: 434)
Name: NF2522_low_1
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2522_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 24 - 421
Target Start/End: Complemental strand, 19190147 - 19189750
Alignment:
| Q |
24 |
gaataaccattttttcgtccggtaggaacaccggaggaagagtcatgttgacttagataaccagcggctttgtcaacatacatgccaacgcccttactct |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19190147 |
gaataacccttttttcgtccggtaggaacaccggaggaagagtcatgttgacttagataaccagcggctttgtcaacatacatgccaacgcccttactct |
19190048 |
T |
|
| Q |
124 |
catcaacaacaccagttgcacctaaaatattggaagcggcaaccgcaaccttggccttgttcactttgccaggttcatggttgtaaacggactgtgccgc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19190047 |
catcaacaacaccagttgcacctaaaatattggaagcagcaaccgcaaccttggccttgttcaccttgccaggttcatggttgtaaacggactgtgccgc |
19189948 |
T |
|
| Q |
224 |
gtccgacaagaccttagcagaggaaaaaagctcggtactcgaatggttctggctgtgacgttgttccttcccatgaccaccataataattgttgttgtag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19189947 |
gtccgacaagaccttagcagaggaaaaaagctcggtactcgaatggttctggctgtgacgttgttccttcccatgaccaccataataattgttgttgtag |
19189848 |
T |
|
| Q |
324 |
ttgtccataatttttagttgtgtatcaatatcagaaattaaagaagtgttgttattgtaatgagattgcttacatataggagaggtggtatttgtagg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19189847 |
ttgtccataatttttagttgtgtatcaatatcagaaattaaagaagtgttgttattgtaatgagattgcttgcatataggagaggtggtatttgtagg |
19189750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University