View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2522_low_4 (Length: 363)
Name: NF2522_low_4
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2522_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 39672347 - 39672677
Alignment:
| Q |
20 |
ctgggtattctttgttatggcttcttatgtgggccacagctatggggcttttgattcagcttttgtcagcaaggcttggtgtggctacagggaagcattt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39672347 |
ctgggtattctttgttatggcttcttatgtgggccacagctatgggacttttgattcagcttttgtcagctaggcttggtgtggctacagggaagcattt |
39672446 |
T |
|
| Q |
120 |
ggctgagctttgtagggaggagtatcctagatgggctaggtatgtgctttgggttatggctgagtttgctcttattggttctgacatacaagaggttatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672447 |
ggctgagctttgtagggaggagtatcctagatgggctaggtatgtgctttgggttatggctgagtttgctcttattggttctgacatacaagaggttatt |
39672546 |
T |
|
| Q |
220 |
ggtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtgttgtcattactgctcttgattggtaagtctaatttactaatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672547 |
ggtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtgttgtcattactgctcttgattggtaagtctaatttactaatt |
39672646 |
T |
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| Q |
320 |
atccattttgcttctttttagtttacttgat |
350 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
39672647 |
atccattttgcttctttttagtttacttgat |
39672677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 9562414 - 9562357
Alignment:
| Q |
20 |
ctgggtattctttgttatggcttcttatgtgggccacagctatggggcttttgattca |
77 |
Q |
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|||||||||| |||||||| |||||||||||||| | | |||||||||||||||||| |
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| T |
9562414 |
ctgggtattcattgttatgacttcttatgtgggctattgatatggggcttttgattca |
9562357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 5805504 - 5805221
Alignment:
| Q |
20 |
ctgggtattctttgttatggcttcttatgtgggccacagctatggggcttttgattcagcttttgtcagcaaggcttggtgtggctacagggaag-catt |
118 |
Q |
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|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| |||| |
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| T |
5805504 |
ctgggtattcattgttatggcttcttatgtgggctactgctatggggcttttgattcagcttttgtcagcaaggttaggtgttgctac-gggaagacatt |
5805406 |
T |
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| Q |
119 |
tggctgagctttgtagggaggagtatcctagatgggctaggtatgtgctttgggttatggctgagtttgctcttattggttctgacatacaagaggttat |
218 |
Q |
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||||||| |||||||| || |||||||||| ||||||||| ||| |||||| | ||| |||| ||||| | ||||||||||| || ||||||||||| |
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| T |
5805405 |
tggctgaactttgtagagatgagtatcctacttgggctaggattgttctttggttgatgactgaagttgctttaattggttctgatattcaagaggttat |
5805306 |
T |
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| Q |
219 |
tggtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtgttgtcattactgctcttgattggtaa |
303 |
Q |
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||||||||| ||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
5805305 |
tggtagtgccattgctattaggattttgagtaatggccttgttcctctttgggctggtgttgtcattactgctttagattggtaa |
5805221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 47290290 - 47290471
Alignment:
| Q |
121 |
gctgagctttgtagggaggagtatcctagatgggctaggtatgtgctttgggttatggctgagtttgctcttattggttctgacatacaagaggttattg |
220 |
Q |
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||||||||||||| ||||||||||| | ||||| || |||||||||||| |||||||||| ||||| | |||||| |||| || ||||||||||||| |
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| T |
47290290 |
gctgagctttgtaaagaggagtatccgaattgggcgagatatgtgctttggtttatggctgaacttgctttgattggtgctgatattcaagaggttattg |
47290389 |
T |
|
| Q |
221 |
gtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtgttgtcattactgctcttgattggta |
302 |
Q |
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||||||||||||||||| |||||||||| ||| ||| | |||||||||||||||||| | ||||||||| ||||||||| |
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| T |
47290390 |
gtagtgctattgctattcagattcttagtcgtggtgttttgcctctttgggctggtgttcttattactgcttctgattggta |
47290471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 10388316 - 10388442
Alignment:
| Q |
178 |
gctgagtttgctcttattggttctgacatacaagaggttattggtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtg |
277 |
Q |
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|||||||| ||| | |||| | |||| || ||||||||||||||||||||||||||| ||| ||||||||| ||||| || |||| |||||||||||| |
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| T |
10388316 |
gctgagttggctttgattgctgctgatattcaagaggttattggtagtgctattgctcttaagattcttagccatggacttcttcccatttgggctggtg |
10388415 |
T |
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| Q |
278 |
ttgtcattactgctcttgattggtaag |
304 |
Q |
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|| | || || || |||||||||||| |
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| T |
10388416 |
ttattatcacagcctttgattggtaag |
10388442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 21016841 - 21016784
Alignment:
| Q |
23 |
ggtattctttgttatggcttcttatgtgggccacagctatggggcttttgattcagct |
80 |
Q |
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||||||| |||||||| |||||||||||||| || ||| ||||||||||||||||| |
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| T |
21016841 |
ggtattcgttgttatgacttcttatgtgggctactactacagggcttttgattcagct |
21016784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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