View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2522_low_5 (Length: 309)

Name: NF2522_low_5
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2522_low_5
NF2522_low_5
[»] chr1 (25 HSPs)
chr1 (3-132)||(18843983-18844112)
chr1 (7-132)||(47983638-47983763)
chr1 (22-129)||(3660185-3660292)
chr1 (7-129)||(21482862-21482984)
chr1 (5-129)||(41871687-41871811)
chr1 (5-110)||(5770589-5770694)
chr1 (5-96)||(5766864-5766955)
chr1 (34-129)||(49597176-49597271)
chr1 (207-309)||(18843794-18843910)
chr1 (50-129)||(48566757-48566836)
chr1 (22-96)||(46923749-46923823)
chr1 (5-94)||(10308428-10308517)
chr1 (4-129)||(39222656-39222781)
chr1 (207-243)||(5767499-5767535)
chr1 (5-129)||(1671333-1671458)
chr1 (211-243)||(27034204-27034236)
chr1 (211-243)||(45690505-45690537)
chr1 (81-129)||(46178671-46178719)
chr1 (207-243)||(47983826-47983862)
chr1 (208-243)||(5766719-5766754)
chr1 (211-265)||(50066978-50067037)
chr1 (22-68)||(14613623-14613669)
chr1 (5-75)||(33686606-33686676)
chr1 (51-108)||(23602986-23603043)
chr1 (23-94)||(7014816-7014888)
[»] chr2 (11 HSPs)
chr2 (4-129)||(29132643-29132768)
chr2 (5-129)||(29908457-29908581)
chr2 (4-96)||(16710244-16710336)
chr2 (5-129)||(6903724-6903847)
chr2 (4-75)||(32737934-32738005)
chr2 (207-243)||(16710143-16710179)
chr2 (22-74)||(37057171-37057223)
chr2 (50-105)||(28266006-28266061)
chr2 (22-96)||(12874214-12874288)
chr2 (211-243)||(22494714-22494746)
chr2 (81-121)||(24937413-24937453)
[»] chr6 (11 HSPs)
chr6 (4-129)||(13312540-13312665)
chr6 (9-110)||(23912277-23912378)
chr6 (34-129)||(319208-319303)
chr6 (209-279)||(9400177-9400253)
chr6 (58-110)||(17399041-17399093)
chr6 (48-95)||(9521410-9521457)
chr6 (58-129)||(24173565-24173636)
chr6 (211-243)||(35054741-35054773)
chr6 (5-76)||(1077587-1077657)
chr6 (5-75)||(30634177-30634247)
chr6 (84-129)||(2419804-2419849)
[»] chr3 (24 HSPs)
chr3 (5-132)||(6755720-6755847)
chr3 (4-132)||(7956266-7956394)
chr3 (7-129)||(39415302-39415424)
chr3 (5-123)||(48086797-48086915)
chr3 (5-110)||(6462950-6463055)
chr3 (5-129)||(25574781-25574905)
chr3 (4-94)||(49742141-49742232)
chr3 (5-66)||(47560448-47560509)
chr3 (207-243)||(6755612-6755648)
chr3 (58-129)||(8628438-8628508)
chr3 (207-243)||(6463150-6463186)
chr3 (4-131)||(14995139-14995267)
chr3 (207-243)||(14995341-14995377)
chr3 (4-68)||(45801924-45801988)
chr3 (23-75)||(49501594-49501646)
chr3 (211-243)||(53825747-53825779)
chr3 (4-75)||(23029601-23029672)
chr3 (5-64)||(53401547-53401606)
chr3 (49-110)||(32211122-32211183)
chr3 (34-75)||(37282182-37282223)
chr3 (211-243)||(2324105-2324137)
chr3 (4-67)||(19195543-19195607)
chr3 (211-243)||(42384460-42384492)
chr3 (211-243)||(42948915-42948947)
[»] chr7 (17 HSPs)
chr7 (27-125)||(37524169-37524267)
chr7 (5-129)||(8260834-8260959)
chr7 (5-129)||(41219383-41219507)
chr7 (4-110)||(29714253-29714358)
chr7 (31-117)||(34354409-34354495)
chr7 (5-124)||(27874038-27874157)
chr7 (4-129)||(39476482-39476607)
chr7 (49-129)||(21153753-21153833)
chr7 (58-128)||(21613032-21613102)
chr7 (5-75)||(39283944-39284014)
chr7 (5-129)||(18239415-18239539)
chr7 (207-243)||(21613177-21613213)
chr7 (211-243)||(20377810-20377842)
chr7 (211-243)||(26501039-26501071)
chr7 (211-243)||(26591642-26591674)
chr7 (211-243)||(48219592-48219624)
chr7 (57-96)||(35126277-35126316)
[»] chr4 (28 HSPs)
chr4 (5-110)||(2777929-2778034)
chr4 (4-110)||(24608181-24608287)
chr4 (4-129)||(49065559-49065684)
chr4 (5-109)||(49261813-49261918)
chr4 (5-109)||(31936351-31936454)
chr4 (57-129)||(42039021-42039093)
chr4 (22-129)||(9242927-9243034)
chr4 (5-129)||(27761138-27761262)
chr4 (5-129)||(38131393-38131517)
chr4 (5-75)||(42118929-42118999)
chr4 (4-129)||(21713173-21713298)
chr4 (22-98)||(14289681-14289757)
chr4 (207-243)||(24608051-24608087)
chr4 (207-243)||(40962588-40962624)
chr4 (4-76)||(46567248-46567320)
chr4 (4-66)||(9958174-9958236)
chr4 (5-75)||(37694574-37694644)
chr4 (49-110)||(40962721-40962782)
chr4 (49-129)||(32935683-32935763)
chr4 (211-243)||(46815255-46815287)
chr4 (58-132)||(372703-372777)
chr4 (214-243)||(33163148-33163177)
chr4 (26-63)||(50972004-50972041)
chr4 (22-66)||(8932546-8932589)
chr4 (9-109)||(13867811-13867910)
chr4 (211-243)||(28797993-28798025)
chr4 (81-129)||(31823039-31823087)
chr4 (211-243)||(53267272-53267304)
[»] chr8 (10 HSPs)
chr8 (22-129)||(23542751-23542858)
chr8 (5-129)||(34471601-34471724)
chr8 (51-98)||(43835364-43835411)
chr8 (5-75)||(15743251-15743321)
chr8 (4-129)||(43693573-43693698)
chr8 (207-243)||(1931503-1931539)
chr8 (211-243)||(43636495-43636527)
chr8 (5-72)||(5913181-5913248)
chr8 (49-131)||(3964008-3964089)
chr8 (23-75)||(4322669-4322721)
[»] chr5 (15 HSPs)
chr5 (25-115)||(16100855-16100945)
chr5 (7-129)||(28784778-28784900)
chr5 (4-125)||(7083984-7084105)
chr5 (4-96)||(11125826-11125917)
chr5 (22-129)||(6427255-6427362)
chr5 (48-129)||(41758720-41758801)
chr5 (4-96)||(1172977-1173069)
chr5 (53-129)||(10532795-10532871)
chr5 (5-75)||(1081950-1082020)
chr5 (22-108)||(20202638-20202723)
chr5 (58-129)||(10399272-10399343)
chr5 (5-75)||(12144001-12144071)
chr5 (22-75)||(43147488-43147541)
chr5 (23-75)||(2786705-2786757)
chr5 (51-107)||(19043886-19043942)
[»] scaffold1700 (1 HSPs)
scaffold1700 (211-243)||(1024-1056)
[»] scaffold0861 (1 HSPs)
scaffold0861 (22-110)||(3752-3840)
[»] scaffold0217 (1 HSPs)
scaffold0217 (81-129)||(25630-25678)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-68)||(232408-232472)
[»] scaffold0223 (1 HSPs)
scaffold0223 (52-110)||(16110-16168)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 18844112 - 18843983
Alignment:
Q  3 atagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatg 102  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |    
T  18844112 atagttaagttacgccgcctgacttaactaacacactttatatgttctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacg 18844013  T
Q  103 ttggccggcgatcagaactgaagaacacac 132  Q
    |||||||| |||||||||||||||||||||    
T  18844012 ttggccggtgatcagaactgaagaacacac 18843983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 47983638 - 47983763
Alignment:
Q  7 ttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttgg 106  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||| | ||| |||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttgg 47983737  T
Q  107 ccggcgatcagaactgaagaacacac 132  Q
    |||| | |||||||| ||||||||||    
T  47983738 ccggtggtcagaactaaagaacacac 47983763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 3660292 - 3660185
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaact 121  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||  | |||||||||||||||| |||  |||||||| | ||||| ||    
T  3660292 tgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtcagagct 3660193  T
Q  122 gaagaaca 129  Q
    ||||||||    
T  3660192 gaagaaca 3660185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 21482862 - 21482984
Alignment:
Q  7 ttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttgg 106  Q
    |||||| |||| || ||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |  | ||| |||||||||||| ||| |||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttgg 21482961  T
Q  107 ccggcgatcagaactgaagaaca 129  Q
    |||  | ||||| ||||||||||    
T  21482962 ccgatggtcagagctgaagaaca 21482984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 41871687 - 41871811
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || ||||||||||  |||||||||||   |||| ||||||||||| ||||||||||||  | |||||||||||||||| ||| |||    
T  41871687 agttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgtt 41871786  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    |||||| | | ||||||||||||||    
T  41871787 ggccggtggtaagaactgaagaaca 41871811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 5770694 - 5770589
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || |||||||||| |||||||||||| | | |||||| ||||||||||||||||||||  |||||||||| ||||||| ||| | |    
T  5770694 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgcaaggt 5770595  T
Q  105 ggccgg 110  Q
    ||||||    
T  5770594 ggccgg 5770589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 5766955 - 5766864
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    |||||||| |||| || || ||||||| || ||||||||| | | |||||| ||||||||||||||||||||  ||||||||||||||||||    
T  5766955 agttaagtcacgctgcatggcttaactcacacaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactca 5766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 49597176 - 49597271
Alignment:
Q  34 cgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||  | |||||||||||||||| ||| ||||| ||| | |||||||| |||||||    
T  49597176 cgcatcttataacttcagcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaaca 49597271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 18843910 - 18843794
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatctac------aaatacatctctaaact--------tcctcacaccatctcacattctcattttcc 292  Q
    |||||||||||||||||||||| |||||||||||||| |      ||||||| |||||||||        ||||||||| |||||||| |||||||||||    
T  18843910 actatatttatggtagatataatctatgttacaatctccccctataaatacacctctaaactccctcatttcctcacacaatctcacaatctcattttcc 18843811  T
Q  293 tcacgccctccccctat 309  Q
    |||| ||||||||||||    
T  18843810 tcactccctccccctat 18843794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 48566757 - 48566836
Alignment:
Q  50 tgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    ||||||||||||||||||||  |||||  | |||||||||||||||| ||| |||||| || | ||||||||||||||||    
T  48566757 tgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaaca 48566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 46923749 - 46923823
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    ||||||||||| |||||||||||   | ||||||||||||||||||||||| |||  | ||||||||||||||||    
T  46923749 tgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcgcgagttaactca 46923823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 10308428 - 10308517
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaact 94  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | | || |||||||||||||||||||||||| ||||||| |||||||||    
T  10308428 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactggcatgtgcgtgagttaact 10308517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 39222656 - 39222781
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || ||||||||||| ||| |||||||   | ||||||||||||||||||||||| |||  | ||| |||||||||||| |||       
T  39222656 tagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcacca 39222755  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||| ||| | ||||| ||||||||||    
T  39222756 tggtcggtggtcagagctgaagaaca 39222781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 5767535 - 5767499
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  5767535 actatatttatggtagatataacctatgttacaatct 5767499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 1671458 - 1671333
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg-gtatgtgcgcgagttaactcatgcatgt 103  Q
    |||||||| |||| || |||||||| | |||||||||| | ||| |||  ||||||||||||| ||||||| |  | ||||||||||||| || ||| ||    
T  1671458 agttaagtcacgcagcgtgacttaattcacgcaccttacaagttttgcaggacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagt 1671359  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||| ||| | ||| ||||||||||||    
T  1671358 tggtcggtggtcaaaactgaagaaca 1671333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27034204 - 27034236
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  27034204 tatttatggtagatataacctatgttacaatct 27034236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 45690537 - 45690505
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  45690537 tatttatggtagatataacctatgttacaatct 45690505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 46178671 - 46178719
Alignment:
Q  81 tgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||||||||||| |||||||| |||| | ||||||||||||||||    
T  46178671 tgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaaca 46178719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 47983826 - 47983862
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||| |||||||||||||||||||||    
T  47983826 actatatttatggtaaatataacctatgttacaatct 47983862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 5766754 - 5766719
Alignment:
Q  208 ctatatttatggtagatataacctatgttacaatct 243  Q
    |||| |||||||||||||||||||||||||||||||    
T  5766754 ctatgtttatggtagatataacctatgttacaatct 5766719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 50066978 - 50067037
Alignment:
Q  211 tatttatggtagatataacctatgttacaatc-----tacaaatacatctctaaacttcc 265  Q
    |||| |||||||||||||||||||||||||||     || ||||||||||||||||||||    
T  50066978 tattaatggtagatataacctatgttacaatcccccctataaatacatctctaaacttcc 50067037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 14613623 - 14613669
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgc 68  Q
    ||||||||||||||||| || ||| || |||||||||||||||||||    
T  14613623 tgacttaactaacgcacgttgtattttatgcgtgacttaagtcacgc 14613669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 33686676 - 33686606
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | | ||||||||||||||||||||||||||    
T  33686676 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 33686606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 23603043 - 23602986
Alignment:
Q  51 gcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggcc 108  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||  ||| |||||||    
T  23603043 gcgtgacttaagtcacgcacaactagcttgtgcgcgagttaactcgcgcaggttggcc 23602986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 7014888 - 7014816
Alignment:
Q  23 gacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccact-ggtatgtgcgcgagttaact 94  Q
    ||||||||| |||||||| | | | ||| |||||||||||||||||||||||  | || ||||||||||||||    
T  7014888 gacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactaagcatatgcgcgagttaact 7014816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 29132768 - 29132643
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| ||||  | ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||  | |||||||||||||||| ||| ||    
T  29132768 tagttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgt 29132669  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | ||||| ||||||||||    
T  29132668 tggccggtggtcagagctgaagaaca 29132643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 29908457 - 29908581
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    ||||||||||||| || ||||||||||  |||||||||||   ||||||||||||||||||||| |||||||  | |||||||||||||||||||| |||    
T  29908457 agttaagttacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgtt 29908556  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    |||||| | | ||||||||||||||    
T  29908557 ggccggtggttagaactgaagaaca 29908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 16710336 - 16710244
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    ||||||||| |||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||    
T  16710336 tagttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagttaagtcacgcaccactgacatgtgcacgagttaactca 16710244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 6903847 - 6903724
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || |||||||||| | ||||| ||||   | |||||| ||||||||||||||||||||   |||||||||||||||||  ||| ||    
T  6903847 agttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactggccggtgcgcgagttaactcacacat-tt 6903749  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    |||||| | ||||||||||||||||    
T  6903748 ggccggtggtcagaactgaagaaca 6903724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 32738005 - 32737934
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||| || | || ||||||||  ||||||||||||| ||| ||||||||||||||||||||||||||    
T  32738005 tagttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactg 32737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 16710179 - 16710143
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16710179 actatatttatggtagatataacctacgttacaatct 16710143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 37057171 - 37057223
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccact 74  Q
    |||||||||| |||||||| | | | |||||||||||||||||||||||||||    
T  37057171 tgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccact 37057223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 28266006 - 28266061
Alignment:
Q  50 tgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttg 105  Q
    ||||||| ||| ||||||||||||||  ||||||||||||||||||| ||| ||||    
T  28266006 tgcgtgagttaggtcacgcaccactgacatgtgcgcgagttaactcacgcacgttg 28266061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 12874214 - 12874288
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    ||||||||| | ||| |||||||   ||| ||||||||||||||||||||||||   | ||||||||||||||||    
T  12874214 tgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccactgacctatgcgcgagttaactca 12874288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 22494746 - 22494714
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||||||||||||| |||||||    
T  22494746 tatttatggtagatataacctatgtcacaatct 22494714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 24937453 - 24937413
Alignment:
Q  81 tgcgcgagttaactcatgcatgttggccggcgatcagaact 121  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  24937453 tgcgcgagttaactcacgcacgttggccggtgatcagaact 24937413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 13312540 - 13312665
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||  || || |||||||||||| | | ||    
T  13312540 tagttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgt 13312639  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||  | ||||||||||||||||    
T  13312640 tggccgatggtcagaactgaagaaca 13312665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 23912378 - 23912277
Alignment:
Q  9 aagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggcc 108  Q
    |||| ||||||  |||||||||| |||||||||||| | |||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaagttggcc 23912279  T
Q  109 gg 110  Q
    ||    
T  23912278 gg 23912277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 319208 - 319303
Alignment:
Q  34 cgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||||||   |||| ||||||||||||| ||||||||||| | |||||||||||||||| ||| |||||  || | ||||||||||||||||    
T  319208 cgcaccttataacctctgtgtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaagaaca 319303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 9400177 - 9400253
Alignment:
Q  209 tatatttatggtagatataacctatgttacaat------ctacaaatacatctctaaacttcctcacaccatctcac 279  Q
    |||||||||||||||||||||||||||||||||      ||| ||||||  ||| ||||||||||||||||||||||    
T  9400177 tatatttatggtagatataacctatgttacaatctccccctataaatactcctccaaacttcctcacaccatctcac 9400253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 17399041 - 17399093
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccgg 110  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgcaagttggccgg 17399093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 9521410 - 9521457
Alignment:
Q  48 tctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactc 95  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  9521410 tctgcgtgacttaagtcacgcaccactggcatgttcgcgacttaactc 9521457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 24173565 - 24173636
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    ||||||||||||||||||   |||  || |||||||||| ||||||||||||||  ||||||||||||||||    
T  24173565 ttaagtcacgcaccactgacttgtctgcaagttaactcacgcatgttggccggctgtcagaactgaagaaca 24173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 35054741 - 35054773
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  35054741 tatttatggtagatataacctatgttacaatct 35054773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 1077587 - 1077657
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactgg 76  Q
    |||||||| |||| || | |||||||| ||||| |||||| ||||||||||| |||||| ||||||||||||    
T  1077587 agttaagtcacgcagcgtaacttaactcacgcagcttata-gttctgcgtgatttaagttacgcaccactgg 1077657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 30634247 - 30634177
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | ||| ||||||||||||||||||||||||    
T  30634247 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactg 30634177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 2419849 - 2419804
Alignment:
Q  84 gcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    ||||||||||||| ||| ||||||||| | ||||||||||||||||    
T  2419849 gcgagttaactcacgcaagttggccggtggtcagaactgaagaaca 2419804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 6755847 - 6755720
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || |||||||||| |||||||||||| | | || |||||||||||||| ||||||||| ||||||||||||||||||| ||| |||    
T  6755847 agttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagtt 6755748  T
Q  105 ggccggcgatcagaactgaagaacacac 132  Q
    |||||| | | ||| || ||||||||||    
T  6755747 ggccggtggttagagctcaagaacacac 6755720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 7956394 - 7956266
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || ||||||||||| ||||||||||||| | ||||||| ||||| ||| ||||||||  ||||||||||||||||||||||| ||    
T  7956394 tagttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactgacatgtgcgcgagttaactcatgcaggt 7956295  T
Q  104 tggccggcgatcagaactgaagaacacac 132  Q
    ||  ||| | ||| || ||||||||||||    
T  7956294 tgttcgggggtcaaaattgaagaacacac 7956266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 39415302 - 39415424
Alignment:
Q  7 ttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttgg 106  Q
    |||||| |||| || ||||||||||  |||||||||||   |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| |||||    
T  39415302 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttgg 39415401  T
Q  107 ccggcgatcagaactgaagaaca 129  Q
    |||  | | ||||||||||||||    
T  39415402 ccgatggttagaactgaagaaca 39415424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 48086797 - 48086915
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| || | || ||||||||||  |||||||||||   ||||| |||||||||||||||||||||||  | |||||||||||||||| ||| |||    
T  48086797 agttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgtt 48086896  T
Q  105 ggccggcgatcagaactga 123  Q
    |||||| | ||||||||||    
T  48086897 ggccggtggtcagaactga 48086915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 6462950 - 6463055
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||  || |||||||||| |||||||||||| | | || |||||||||||||||||||||||| ||||| | ||||||||||| ||| |||    
T  6462950 agttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagtt 6463049  T
Q  105 ggccgg 110  Q
    ||||||    
T  6463050 ggccgg 6463055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 25574781 - 25574905
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| | ||||| ||||||||||   ||||||| ||   |||| ||||||||||||||||||||||||  | |||||||||||||||| ||| |||    
T  25574781 agttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgtt 25574880  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    || ||| | ||||||||||||||||    
T  25574881 ggtcggtggtcagaactgaagaaca 25574905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 49742232 - 49742141
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg-gtatgtgcgcgagttaact 94  Q
    ||||||||| |||| || |||||||||| |||||||| | | | |||||||||||||||||||||||||||| || | ||||||||||||||    
T  49742232 tagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagtctatgcgcgagttaact 49742141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 47560509 - 47560448
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcac 66  Q
    |||||||| ||||||| |||||||||| || ||||||||| |||||||||||||||||||||    
T  47560509 agttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgacttaagtcac 47560448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 6755648 - 6755612
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  6755648 actatatttatggtagatataacctatgttacaatct 6755612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 8628438 - 8628508
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    ||||||||||||||||||||  ||| || |||||||||| ||| | ||||||| ||||||||||||||||||    
T  8628438 ttaagtcacgcaccactggttggtgggcaagttaactcacgca-ggtggccggtgatcagaactgaagaaca 8628508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 6463150 - 6463186
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6463150 actatatttatggtagatataacctattttacaatct 6463186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 14995139 - 14995267
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggta-tgtgcgcgagttaactcatgcatg 102  Q
    ||||||||| |||| || ||||||||||||| |||||||||   | || |||| ||||||||| ||||||||  | | |||||||||||||||| |||      
T  14995139 tagttaagtcacgcagcgtgacttaactaacacaccttataatctttgtgtgagttaagtcacacaccactgacattttgcgcgagttaactcacgcaca 14995238  T
Q  103 ttggccggcgatcagaactgaagaacaca 131  Q
    |||||| |    |||||||||||||||||    
T  14995239 ttggccagtagccagaactgaagaacaca 14995267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 14995341 - 14995377
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14995341 actatatttatggtagatacaacctatgttacaatct 14995377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 45801988 - 45801924
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgc 68  Q
    ||||||||| ||||  | ||||||||||||||||| || ||| || |||||||||||||||||||    
T  45801988 tagttaagtcacgcaacatgacttaactaacgcacgttgtattttatgcgtgacttaagtcacgc 45801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 49501646 - 49501594
Alignment:
Q  23 gacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||| |||||||| | | | ||||||||||||||||||||||||||||    
T  49501646 gacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 53825747 - 53825779
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  53825747 tatttatggtagatataacctatgttacaatct 53825779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 23029601 - 23029672
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||| |||| || |||||||||| ||||| || ||| | | |||||||||||||||| |||||||||    
T  23029601 tagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtgacttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 53401606 - 53401547
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtc 64  Q
    ||||||||||||| ||  ||||||||| |||||||| ||| | |||||||||||||||||    
T  53401606 agttaagttacgcagcgagacttaactcacgcacctcataagctctgcgtgacttaagtc 53401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 32211122 - 32211183
Alignment:
Q  49 ctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccgg 110  Q
    ||||||||||||||||| || ||| |||   |||||| |||||||||||||||| |||||||    
T  32211122 ctgcgtgacttaagtcatgctccagtggccggtgcgctagttaactcatgcatggtggccgg 32211183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 37282223 - 37282182
Alignment:
Q  34 cgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  37282223 cgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 2324137 - 2324105
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||||||||||||||| |||||    
T  2324137 tatttatggtagatataacctatgttataatct 2324105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 19195543 - 19195607
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgt-tctgcgtgacttaagtcacg 67  Q
    ||||||| | ||||| | ||| ||||||||||||||||||| || ||| ||||||||||||||||    
T  19195543 tagttaactcacgccacatgagttaactaacgcaccttataggtctctacgtgacttaagtcacg 19195607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 42384492 - 42384460
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||| |||||||||||||||||||||    
T  42384492 tatttatggtacatataacctatgttacaatct 42384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 42948915 - 42948947
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||| ||||||||    
T  42948915 tatttatggtagatataacctatgctacaatct 42948947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 37524267 - 37524169
Alignment:
Q  27 taactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaag 125  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||||| |||| ||| |||||| || | ||||||||||||    
T  37524267 taactaacgcaccttataagctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtcagaactgaag 37524169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 8260834 - 8260959
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg-gtatgtgcgcgagttaactcatgcatgt 103  Q
    |||||||| |||| || |||||||||| | ||||||||||   |||||||||||||||||||||||||||| |  | |||||||||||||||| ||| ||    
T  8260834 agttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagt 8260933  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | |||||||||| |||||    
T  8260934 tggccggtggtcagaactgatgaaca 8260959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 41219507 - 41219383
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    ||||||||||| | || ||| ||||||  |||| ||||||   |||||||||||||||||||||| ||||||  | |||||||||||||||| ||| |||    
T  41219507 agttaagttacactgcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgtt 41219408  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    ||| || | ||||||||||||||||    
T  41219407 ggctggtggtcagaactgaagaaca 41219383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 29714253 - 29714358
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || |||||||| | |||||||||||| | |||||||||||||||||| |||||||||   || ||||||||||||||| ||| ||    
T  29714253 tagttaagtcacgctgcgtgacttaaatcacgcaccttata-gctctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcaggt 29714351  T
Q  104 tggccgg 110  Q
    |||||||    
T  29714352 tggccgg 29714358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 34354495 - 34354409
Alignment:
Q  31 taacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcag 117  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||  | ||||||||||||||||  || |||||| || ||||||    
T  34354495 taacgcaccttatatgctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttggctggtgatcag 34354409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 27874157 - 27874038
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || || |||||||  |||||| ||||   ||||||||||||||| ||||||||||||   | |||||||||||||||| ||| |||    
T  27874157 agttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgtt 27874058  T
Q  105 ggccggcgatcagaactgaa 124  Q
    |||||| | |||||||||||    
T  27874057 ggccggtggtcagaactgaa 27874038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 39476482 - 39476607
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| | || || ||||||||||| |||||||||||   | ||||||||||||||||||||||| | |  | |||||||||||||||| |||       
T  39476482 tagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcacca 39476581  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | ||||| ||||||||||    
T  39476582 tggccggtggtcagagctgaagaaca 39476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 21153753 - 21153833
Alignment:
Q  49 ctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||| ||| || |||||| | || || ||||||||||    
T  21153753 ctgcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaaca 21153833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 21613032 - 21613102
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaac 128  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||  ||| |||| | |||||||||||||||    
T  21613032 ttaagtcacgcaccattggcatgtgcgcgagttaactcacgcagcttgaccggtggtcagaactgaagaac 21613102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 39283944 - 39284014
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| || || ||||||| |||||||| ||| | ||||||||||||||||||||||||||||    
T  39283944 agttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 18239539 - 18239415
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || ||||||||||    |||||||||   |||| ||||||||||||||||| || |||  | |||||||||||||| | ||| |||    
T  18239539 agttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgtt 18239440  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    || ||| | ||||||||||||||||    
T  18239439 ggtcggtggtcagaactgaagaaca 18239415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 21613177 - 21613213
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  21613177 actatatttatggtagatataacctatgttacaatct 21613213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 20377810 - 20377842
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  20377810 tatttatggtagatataacctatgttacaatct 20377842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 26501071 - 26501039
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  26501071 tatttatggtagatataacctatgttacaatct 26501039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 26591642 - 26591674
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  26591642 tatttatggtagatataacctatgttacaatct 26591674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 48219592 - 48219624
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  48219592 tatttatggtagatataacctatgttacaatct 48219624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 35126316 - 35126277
Alignment:
Q  57 cttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  35126316 cttaagtcacgcacaactggtctgtgcgcgagttaactca 35126277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 2777929 - 2778034
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || |||||||||| |||||||||||| ||||||||| ||||||||||| | |||||||  |||||||||||||||||| ||| |||    
T  2777929 agttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgcaagtt 2778028  T
Q  105 ggccgg 110  Q
    ||||||    
T  2778029 ggccgg 2778034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 24608287 - 24608181
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    |||||||||||||| ||  |||||||||| |||||||||||   | || |||| |||||||||||| |||||||||||||||||||||||||| ||| ||    
T  24608287 tagttaagttacgcagcgagacttaactagcgcaccttataatctttgtgtgagttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagt 24608188  T
Q  104 tggccgg 110  Q
    |||||||    
T  24608187 tggccgg 24608181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 49065684 - 49065559
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||  || ||||||||||| |||||||||||   | |||||||||||||||||||||||||||  | |||||||||||||||| |||  |    
T  49065684 tagttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacct 49065585  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | ||||| ||||||||||    
T  49065584 tggccggtggtcagagctgaagaaca 49065559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 49261918 - 49261813
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatat-gttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    |||||||| |||| || |||||||||| |||||||| |||  |||| |||||||||||||||||||||||||  |||||||| ||||||| || ||| ||    
T  49261918 agttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcaccactgacatgtgcgcaagttaacccacgcaggt 49261819  T
Q  104 tggccg 109  Q
    ||||||    
T  49261818 tggccg 49261813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 31936454 - 31936351
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| ||||  | |||||||||| ||||||||||| || | || ||||||||||||||||||||||||  || ||||||||||||||| ||| |||    
T  31936454 agttaagtcacgcgacttgacttaactcacgcaccttat-tgctttgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggtt 31936356  T
Q  105 ggccg 109  Q
    |||||    
T  31936355 ggccg 31936351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 42039021 - 42039093
Alignment:
Q  57 cttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||| |||||||||||||||  |||||||||||||||||| ||| ||||||||| | ||||||||||||||||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaaca 42039093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 9243034 - 9242927
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaact 121  Q
    |||||||||| || |||||||||   ||||||||||||||||||||||||||||     | |||||||||||||| ||| |||||||||   ||||||||    
T  9243034 tgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactgagccttccgcgagttaactcacgcaagttggccggtagtcagaact 9242935  T
Q  122 gaagaaca 129  Q
    ||||||||    
T  9242934 gaagaaca 9242927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 27761262 - 27761138
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || ||| |||| |  |||||||||||   ||||||||||||||||||||||||||| |  | ||||||||||||||||  || |||    
T  27761262 agttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgtt 27761163  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    ||||||   |||||||| |||||||    
T  27761162 ggccggtagtcagaactcaagaaca 27761138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 38131393 - 38131517
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || ||||||||||  |||||||| ||   |||| ||||||||||||||||||||| ||  | ||| |||||||||||| ||| |||    
T  38131393 agttaagtcacgctgcatgacttaacttgcgcaccttctaacctctgtgtgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgtt 38131492  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
     ||||| | ||| ||||||||||||    
T  38131493 agccggtggtcacaactgaagaaca 38131517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 42118929 - 42118999
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| || |||||||||| || ||||| | | ||||||||||||||||||||||||||||||    
T  42118929 agttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgacttaagtcacgcaccactg 42118999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 21713298 - 21713173
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || ||| ||||||| |||||||||||   | |||||| |||||||||||||||| |||  | ||| |||||||||||| |||       
T  21713298 tagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtggcttaagtcacgcaccaatggcctatgcacgagttaactcacgcaaca 21713199  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | ||||| ||||||||||    
T  21713198 tggccggtggtcagagctgaagaaca 21713173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 14289681 - 14289757
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatg 98  Q
    ||||||||||| |||||||||||   | || |||||||||||||| |||||||| | | ||||||||||||||||||    
T  14289681 tgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactgatctatgcgcgagttaactcatg 14289757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 24608087 - 24608051
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  24608087 actatatttatggtagatataacctatgttacaatct 24608051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 40962624 - 40962588
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  40962624 actatatttatggtagatataacctatgttacaatct 40962588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 46567248 - 46567320
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactgg 76  Q
    ||||||||| ||||  | |||||||||||| |||||||||| ||||| |||||||||| |||| |||||||||    
T  46567248 tagttaagtcacgcaacatgacttaactaatgcaccttataagttcttcgtgacttaaatcacacaccactgg 46567320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 9958236 - 9958174
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcac 66  Q
    ||||||||| |||| || ||||||||||||||||| || ||| || |||||||||||||||||    
T  9958236 tagttaagtcacgcagcgtgacttaactaacgcacgttgtattttatgcgtgacttaagtcac 9958174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 37694644 - 37694574
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| || |||||||||| |||||||| | | | ||||| ||||||||||||||||||||||    
T  37694644 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgacttaagtcacgcaccactg 37694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 40962782 - 40962721
Alignment:
Q  49 ctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccgg 110  Q
    |||||||| ||||||||| ||||||||| || ||| |||||||||||| ||| |||||||||    
T  40962782 ctgcgtgagttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccgg 40962721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 32935683 - 32935763
Alignment:
Q  49 ctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||| | ||||||||||||||||| |  | |||||||||||||||| ||| ||||||||| |  |||| ||||||||||    
T  32935683 ctgcgttagttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaaca 32935763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 46815255 - 46815287
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  46815255 tatttatggtagatataacctatgttacaatct 46815287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 372703 - 372777
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaacacac 132  Q
    ||||||||||||||||||| ||||||| |||||||  || ||| ||||||||| | || || || ||||||||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaacacac 372777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 33163148 - 33163177
Alignment:
Q  214 ttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||||||||||||||||||    
T  33163148 ttatggtagatataacctatgttacaatct 33163177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 50972004 - 50972041
Alignment:
Q  26 ttaactaacgcaccttatatgttctgcgtgacttaagt 63  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  50972004 ttaactaccgcaccttataggttctgcgtgacttaagt 50972041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 8932546 - 8932589
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcac 66  Q
    |||||||||| |||||||||||| | |||||||||||||||||||    
T  8932546 tgacttaactcacgcaccttata-gctctgcgtgacttaagtcac 8932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 13867910 - 13867811
Alignment:
Q  9 aagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggcc 108  Q
    |||| |||| || |||||||||| | |||||| ||| | || || ||||||||||||||||||||| |   ||||||||| ||||||| ||| |||||||    
T  13867910 aagtcacgctgcgtgacttaactcatgcacctaata-gctcagcatgacttaagtcacgcaccactagccggtgcgcgagctaactcacgcaagttggcc 13867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 28797993 - 28798025
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    ||||||||||||||| |||||||||||||||||    
T  28797993 tatttatggtagatacaacctatgttacaatct 28798025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 31823039 - 31823087
Alignment:
Q  81 tgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||| ||||||||||| ||| ||||||||| | ||||||||||||||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaaca 31823087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 53267272 - 53267304
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    ||||| |||||||||||||||||||||||||||    
T  53267272 tatttgtggtagatataacctatgttacaatct 53267304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 23542858 - 23542751
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaact 121  Q
    |||||||| |||| |||| |||| | |||||||||||||| ||||||||||||||  | |||||||||||||||||||| ||||| ||| | ||||||||    
T  23542858 tgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtcggtggtcagaact 23542759  T
Q  122 gaagaaca 129  Q
    ||||||||    
T  23542758 gaagaaca 23542751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 34471724 - 34471601
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgtt 104  Q
    |||||||| |||| || ||||||||||  |||||||||||   | ||||||||||||||||||||||| |||  | |||||||||||||||| ||| |||    
T  34471724 agttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgacttaagtcacgcaccattgg-ctatgcgcgagttaactcacgcacgtt 34471626  T
Q  105 ggccggcgatcagaactgaagaaca 129  Q
    |||||| | | ||||||||||||||    
T  34471625 ggccggtggttagaactgaagaaca 34471601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 43835411 - 43835364
Alignment:
Q  51 gcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatg 98  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  43835411 gcgtgacttaagtcacgcaccaccggtctgtgcgcgagttaattcatg 43835364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 15743321 - 15743251
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | ||||||||||||||||||||||||||||    
T  15743321 agttaagtcacgcagcaagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 15743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 43693698 - 43693573
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    |||||| || |||| || ||||||||||| |||||||||||   | || ||||||||| |||||||||| |||  | ||||||||| |||||| |||       
T  43693698 tagttaggtcacgcagcgtgacttaactagcgcaccttataatctatgtgtgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcacca 43693599  T
Q  104 tggccggcgatcagaactgaagaaca 129  Q
    ||||||| | ||||| ||||||||||    
T  43693598 tggccggtggtcagagctgaagaaca 43693573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 1931503 - 1931539
Alignment:
Q  207 actatatttatggtagatataacctatgttacaatct 243  Q
    |||||||||| ||||||||||||||||||||||||||    
T  1931503 actatatttacggtagatataacctatgttacaatct 1931539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 43636495 - 43636527
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  43636495 tatttatggtagatataacctatgttacaatct 43636527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 5913248 - 5913181
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcacca 72  Q
    |||||||| || |||| |||||||||| |||||||| | | | ||||||||||||||||||| |||||    
T  5913248 agttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacacacca 5913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 3964008 - 3964089
Alignment:
Q  49 ctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaacaca 131  Q
    |||||||| |||||||||||| ||||| | ||| |||||||||||||| ||| ||||||||| | | ||| || |||||||||    
T  3964008 ctgcgtgaattaagtcacgcatcactg-tctgtccgcgagttaactcacgcaagttggccggtggttagagctcaagaacaca 3964089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 4322669 - 4322721
Alignment:
Q  23 gacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||| |||||||| | | ||||||||| ||||| ||||||||||||||    
T  4322669 gacttaactcacgcacctcacaagttctgcgtaacttaggtcacgcaccactg 4322721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 16100855 - 16100945
Alignment:
Q  25 cttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatc 115  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||| ||||    
T  16100855 cttaactcacgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagttggccggtgatc 16100945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 28784900 - 28784778
Alignment:
Q  7 ttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttgg 106  Q
    ||||||||||| || ||||||||| ||| |||||||||  || ||||||||||||||||| | |||||||  || | ||||||||||||| ||| |||||    
T  28784900 ttaagttacgctgcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttgg 28784801  T
Q  107 ccggcgatcagaactgaagaaca 129  Q
     ||| | ||||||||||||||||    
T  28784800 tcggtggtcagaactgaagaaca 28784778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 7084105 - 7083984
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgt 103  Q
    ||||||||| |||| || ||||||||||| |||||||||||   | ||||||||||||||||||||| | |||  | ||||||||||||||||||||  |    
T  7084105 tagttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcacct 7084006  T
Q  104 tggccggcgatcagaactgaag 125  Q
    ||||||| | ||||| ||||||    
T  7084005 tggccggtggtcagagctgaag 7083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 11125917 - 11125826
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    ||||||||| ||||  | |||||||||| |||||||||||| | |||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  11125917 tagttaagtcacgcaacgtgacttaactcacgcaccttata-gctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactca 11125826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 6427255 - 6427362
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaact 121  Q
    ||||||||||| |||||||||||   | ||||||||||||||||||||| |||||  | |||||||||||||||| |||  |||||||| ||| ||| ||    
T  6427255 tgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttggccggtgattagagct 6427354  T
Q  122 gaagaaca 129  Q
    ||||||||    
T  6427355 gaagaaca 6427362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 41758801 - 41758720
Alignment:
Q  48 tctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||||||| |||||||||||| ||   | |||||||||||||||||||| |||||| || | ||||||||||||||||    
T  41758801 tctgcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaaca 41758720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 1173069 - 1172977
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactca 96  Q
    ||||||||| |||| || ||||||||| | |||||||||||   |||||||||||||||| ||||||||||||  | ||||| ||||||||||    
T  1173069 tagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtgacttaagttacgcaccactggcctatgcgccagttaactca 1172977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 10532795 - 10532871
Alignment:
Q  53 gtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||| |||||||| ||||||||||  |||||||||||||||||| ||| ||||||||| | ||||| ||||||||||    
T  10532795 gtgagttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaaca 10532871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 1082020 - 1081950
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | ||||||||||||||||||||||||||||    
T  1082020 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 1081950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 20202723 - 20202638
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggcc 108  Q
    |||||||||| ||||| |||||| | |||||||||||| |||||| |||||||||  || ||||||||||||||  ||| |||||||    
T  20202723 tgacttaactcacgcatcttata-gctctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttggcc 20202638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10399343 - 10399272
Alignment:
Q  58 ttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||| | |||||| |  |||||||||||||||||||||| ||| ||||| | ||| ||||||||||||    
T  10399343 ttaagtcatgtaccactagcttgtgcgcgagttaactcatgcacgtttgccggtggtcaaaactgaagaaca 10399272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 12144001 - 12144071
Alignment:
Q  5 agttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||| |||| ||  ||||||||| |||||||| | | | | ||||||||||||||||||||||||||    
T  12144001 agttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 43147541 - 43147488
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    |||||||||||||||| || | |   ||||||||||||||||||||||||||||    
T  43147541 tgacttaactaacgcatctcacaaactctgcgtgacttaagtcacgcaccactg 43147488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 2786705 - 2786757
Alignment:
Q  23 gacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactg 75  Q
    ||||||||| |||||||| | | | |||||||||||||||||| |||||||||    
T  2786705 gacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 2786757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 19043886 - 19043942
Alignment:
Q  51 gcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggc 107  Q
    |||||||||||||||| ||||| ||   || ||||||||||||||||||| ||||||    
T  19043886 gcgtgacttaagtcacacaccattgacttgggcgcgagttaactcatgcaggttggc 19043942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 1056 - 1024
Alignment:
Q  211 tatttatggtagatataacctatgttacaatct 243  Q
    |||||||||||||||||||||||||||||||||    
T  1056 tatttatggtagatataacctatgttacaatct 1024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 3840 - 3752
Alignment:
Q  22 tgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccgg 110  Q
    ||||||| ||||| ||||||||| | | ||  ||||||||||||| |||||||||  | |||||||||||||||| |||  ||||||||    
T  3840 tgacttagctaacacaccttataagctttgtctgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttggccgg 3752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 25630 - 25678
Alignment:
Q  81 tgcgcgagttaactcatgcatgttggccggcgatcagaactgaagaaca 129  Q
    |||||||||||||||| ||| ||||||||| | ||||||||||||||||    
T  25630 tgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaaca 25678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 232472 - 232408
Alignment:
Q  4 tagttaagttacgccgcctgacttaactaacgcaccttatatgttctgcgtgacttaagtcacgc 68  Q
    ||||||||| |||| || ||||||||||||| ||| || ||| || |||||||||||||||||||    
T  232472 tagttaagtcacgcagcgtgacttaactaacacacgttgtattttatgcgtgacttaagtcacgc 232408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 16168 - 16110
Alignment:
Q  52 cgtgacttaagtcacgcaccactggtatgtgcgcgagttaactcatgcatgttggccgg 110  Q
    ||||||||||||||||| ||| |||  |||||||| ||||||||| ||| |||||||||    
T  16168 cgtgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccgg 16110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University