View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2522_low_6 (Length: 287)

Name: NF2522_low_6
Description: NF2522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2522_low_6
NF2522_low_6
[»] chr3 (23 HSPs)
chr3 (1-270)||(18026292-18026561)
chr3 (35-270)||(27392092-27392327)
chr3 (44-270)||(12146184-12146413)
chr3 (44-270)||(27347574-27347800)
chr3 (76-270)||(27376367-27376564)
chr3 (119-270)||(17746113-17746264)
chr3 (119-270)||(19047433-19047584)
chr3 (175-270)||(28147894-28147989)
chr3 (46-271)||(28159362-28159590)
chr3 (46-270)||(28183927-28184154)
chr3 (181-270)||(27461051-27461137)
chr3 (175-270)||(28002338-28002433)
chr3 (175-270)||(28510671-28510766)
chr3 (175-270)||(27975512-27975607)
chr3 (187-270)||(28081903-28081986)
chr3 (173-270)||(11418891-11418988)
chr3 (90-162)||(26142185-26142257)
chr3 (175-270)||(28132110-28132205)
chr3 (175-270)||(28481499-28481594)
chr3 (227-270)||(26115034-26115077)
chr3 (191-270)||(26180615-26180694)
chr3 (191-270)||(26237350-26237429)
chr3 (232-270)||(27918532-27918570)
[»] scaffold0043 (1 HSPs)
scaffold0043 (44-270)||(54589-54818)
[»] chr2 (2 HSPs)
chr2 (79-270)||(22391289-22391483)
chr2 (175-270)||(8019921-8020016)
[»] scaffold0257 (1 HSPs)
scaffold0257 (175-270)||(17489-17584)
[»] chr7 (1 HSPs)
chr7 (180-270)||(8693337-8693427)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 18026292 - 18026561
Alignment:
Q  1 ccaaataagatagccaagtacgtcatattctctcattgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatga 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026292 ccaaataagagagccaagtacgtcatattctctcattgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatga 18026391  T
Q  101 attctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026392 attctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcct 18026491  T
Q  201 ctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026492 ctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 18026561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 27392092 - 27392327
Alignment:
Q  35 attgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttga 134  Q
    |||||||| ||||||||||||||| |||||| | ||||| |||||| | || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  27392092 attgctgaagtcagagagagttctcgacaactttgtataaaacgatatggtgctgcttgaaaatgaattccttgggtctggctgaggcttggtaggttga 27392191  T
Q  135 gaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctt 234  Q
     |||||||||| || ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||  |||||||||  |||||| | ||||||    
T  27392192 caaatgctacaaatttcagatttggaatattgactttctcatcaacttcgcatacaaatatttcctctagctcatctgcttctcttatgatcagaacctt 27392291  T
Q  235 tagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27392292 tagctcaggaagctctttacatatggagattggaaa 27392327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 12146413 - 12146184
Alignment:
Q  44 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 143  Q
    |||||||||||||||||||||  | | |||  |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||||    
T  12146413 gtcagagagagttcttgacaattttggataatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgcta 12146314  T
Q  144 catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctc 240  Q
    || ||  ||| |||||||||||||||| || ||||    |||||||||||||||||||||||||||  | |||||||  ||| |||| || || ||||||    
T  12146313 caaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagctcatttgcttctcttataattagaaactgtagctc 12146214  T
Q  241 aggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||| ||||||||||||||||    
T  12146213 aggaagctctttacatatggagattggaaa 12146184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 27347800 - 27347574
Alignment:
Q  44 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 143  Q
    |||||||||||||||||||||  | | | |  |||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||| |||||||     
T  27347800 gtcagagagagttcttgacaattttggacaatacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttgacaaatgctg 27347701  T
Q  144 catatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcagg 243  Q
    || || |||| |||||||||||||||| || |||| ||| |||||||||||||||||| |  |  |||| ||||  |||||||| | ||| |||||||||    
T  27347700 caaatttcagttttggaatattgactttctcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcagg 27347601  T
Q  244 aagctctttatatatggagattggaaa 270  Q
    |||||||||| ||||||||||||||||    
T  27347600 aagctctttacatatggagattggaaa 27347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 27376564 - 27376367
Alignment:
Q  76 acgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctga 175  Q
    |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||||||  | | |||||||| |||||||||| || |    
T  27376564 acgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctacaagttttagatttggcatattgactttctca 27376465  T
Q  176 tca---acttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||    |||||||||||||||||||||||||||| |||| ||||  ||| | || |  || ||||||||||||||||| | ||||||||||||||||    
T  27376464 tcaccttcttcacatacaaatatttcctctagcttatctgattcttttatcactagactctctagctcaggaagctcttcacatatggagattggaaa 27376367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 17746113 - 17746264
Alignment:
Q  119 aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttcta 218  Q
    |||||||||||||||| |||||| |||  | |||| || ||||||||||||| || |||| |||||| | ||||||||||||||||||  | |||||||     
T  17746113 aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagctcatatgcttctc 17746212  T
Q  219 ctatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
     ||| |||| | ||| ||||||||||||||||||| ||||||||||||||||    
T  17746213 ttatcattagaccctctagctcaggaagctctttacatatggagattggaaa 17746264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 19047433 - 19047584
Alignment:
Q  119 aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttcta 218  Q
    |||||||||||||||| |||||| |||  | |||| || ||||||||||||| || |||| |||||| | ||||||||||||||||||  | |||||||     
T  19047433 aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagctcatatgcttctc 19047532  T
Q  219 ctatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
     ||| |||| | ||| ||||||||||||||||||| ||||||||||||||||    
T  19047533 ttatcattagaccctctagctcaggaagctctttacatatggagattggaaa 19047584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 28147989 - 28147894
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||| ||||| ||||||||||||||||| ||  |||||||||  |||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  28147989 atcaaattcacttacaaatatttcctctaactcatctgcttctcttatgatcagaacctttagctcaggaagctctttagatatggagattggaaa 28147894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 28159590 - 28159362
Alignment:
Q  46 cagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctaca 145  Q
    ||||||||||| |||||||    ||||  ||||||||| ||| || ||||| |||||||| ||||  || |||||| ||||||| ||   |||| |||||    
T  28159590 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactaca 28159491  T
Q  146 tatctcagatttggaatattgacttcctgatcaac---ttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcag 242  Q
     ||   ||||||||||| || |||| ||||||| |   ||||  ||||||||||||||||||||  |||| ||||  ||| || | ||| ||||||||||    
T  28159490 cattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatcatcagaacatttagctcag 28159391  T
Q  243 gaagctctttatatatggagattggaaat 271  Q
    ||||||||||| |||||||||||||||||    
T  28159390 gaagctctttacatatggagattggaaat 28159362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 270
Target Start/End: Complemental strand, 28184154 - 28183927
Alignment:
Q  46 cagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctaca 145  Q
    ||||||||||| |||||||    ||||  ||||||||| ||| || ||||| |||||||| ||||  || |||||||||||||| ||   |||| |||||    
T  28184154 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactaca 28184055  T
Q  146 tatctcagatttggaatattgacttcctgatcaac---ttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcag 242  Q
     ||   ||||||||||| |  ||||  |||||| |   ||||| ||||||||||||||| ||||  |||||||||  ||| || | ||| ||||||||||    
T  28184054 cattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatcatcagaacatttagctcag 28183955  T
Q  243 gaagctctttatatatggagattggaaa 270  Q
    ||||||||||| ||||||||||||||||    
T  28183954 gaagctctttacatatggagattggaaa 28183927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 27461051 - 27461137
Alignment:
Q  181 ttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||| ||||||||||||||||||||   ||||||||  |||||||| ||||| ||||||||||||||||||| ||||||| ||||||||    
T  27461051 ttcacttacaaatatttcctctagct---ctgcttctcttatgattagaacctctagctcaggaagctctttacatatggacattggaaa 27461137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 28002433 - 28002338
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| | ||||||||||||||| ||  |||||||||  |||| | | ||| ||||||||||||||||||||| ||||||||||||||||    
T  28002433 atcaccttcacttccaaatatttcctctacctcgtctgcttctcttatggtcagaacatttagctcaggaagctctttacatatggagattggaaa 28002338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 28510671 - 28510766
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| ||||||||||||||||| ||  |||||||||  |||||| | |||  ||||||| |||||||||||| ||||||||||||||||    
T  28510671 atcaccttcacttacaaatatttcctctaactcatctgcttctcttatgatcagaacaattagctctggaagctctttagatatggagattggaaa 28510766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 27975607 - 27975512
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| ||||||||||||||||||||   ||||||||  ||| |  | ||||| ||||||| ||||||||||| ||||||||||||||||    
T  27975607 atcaccttcacttacaaatatttcctctagctcagctgcttctcttatcaagagaacctctagctcaagaagctctttacatatggagattggaaa 27975512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 28081986 - 28081903
Alignment:
Q  187 tacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||||| ||  |||||||||  |||||| | |   ||||||||||||||||||||||||| ||||||||||||    
T  28081986 tacaaatatttcctctaactcatctgcttctcttatgatcagataatttagctcaggaagctctttatatacggagattggaaa 28081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 11418988 - 11418891
Alignment:
Q  173 tgatcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||||| |||||| ||||||||||||||||||||  ||||| |||  ||| || | ||| | ||||||||||||||||||| | | ||||||||||||    
T  11418988 tgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatcatcagaacatatagctcaggaagctctttacacagggagattggaaa 11418891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 26142185 - 26142257
Alignment:
Q  90 cctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaat 162  Q
    |||||||||||||||  ||||  |||| ||| ||||||||||||| ||||||||||  |||||||||||||||    
T  26142185 cctgaaaatgaattccctgggcatggcagagccttggtaggttgacaaatgctacaactctcagatttggaat 26142257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 28132205 - 28132110
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| ||||||||||||||||| ||  |||||||||  |||||| | |   | ||||||||||||||||||| ||| ||||||||||||    
T  28132205 atcaccttcacttacaaatatttcctctaactcgtctgcttctcttatgatcagataatatagctcaggaagctctttacatacggagattggaaa 28132110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 28481499 - 28481594
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| | ||||||||||||| | ||  |||||||||  |||||| | ||| |||||||  |||||||||||| ||||||||||||||||    
T  28481499 atcaccttcacttccaaatatttcctcgaactcgtctgcttctcttatgatgagaacatttagctttggaagctctttagatatggagattggaaa 28481594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 26115034 - 26115077
Alignment:
Q  227 ataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||    
T  26115034 ataacctttagctcaggaagctctttacaaatggagactggaaa 26115077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 26180615 - 26180694
Alignment:
Q  191 aatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||||  | |||||||  ||| |  ||||||||||||||||||| ||||||| | ||||||| ||||||    
T  26180615 aatatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaa 26180694  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 26237350 - 26237429
Alignment:
Q  191 aatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||| ||  | |||||||  |||||  ||||||||||||||||||| ||||||| | ||||||| ||||||    
T  26237350 aatatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaa 26237429  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 27918570 - 27918532
Alignment:
Q  232 ctttagctcaggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  27918570 ctttagctcaggaaggtctttacatatggagattggaaa 27918532  T

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Target: scaffold0043 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 54589 - 54818
Alignment:
Q  44 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 143  Q
    |||||||||||||||||||||  | | | | ||||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||  ||||||||    
T  54589 gtcagagagagttcttgacaattttggacaaaacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttggtaaatgcta 54688  T
Q  144 catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctc 240  Q
    ||  | |||||||||||| |||||||| |||||||    |||||||||||||||||||||||||||  | |||||||  |||||||| | | | ||||||    
T  54689 caactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagcatctagctc 54788  T
Q  241 aggaagctctttatatatggagattggaaa 270  Q
    ||||||||||||| ||||||||||||||||    
T  54789 aggaagctctttacatatggagattggaaa 54818  T

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Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 22391483 - 22391289
Alignment:
Q  79 attttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatca 178  Q
    ||||||||| |||||||||||||||  |||||||||   ||||||||||||||||| ||||| ||||  | | |||||||| |||||||||| |||||||    
T  22391483 attttgtacagcctgaaaatgaatttcttgggtctgatagaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatca 22391384  T
Q  179 ---acttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
        |||||||||||||||||||||||||||| | ||||||   ||| | || | ||| ||||||||||||||||||| ||||||||||||||||    
T  22391383 ccttcttcacatacaaatatttcctctagcttatatgcttcacttatcactagagcctctagctcaggaagctctttacatatggagattggaaa 22391289  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 8020016 - 8019921
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| ||||||||||||||||||||  | |||||||  |||||| | |   ||||||||||||||||||||| ||||||||||||||||    
T  8020016 atcaccttcacttacaaatatttcctctagctcatatgcttctcttatgatcagataatttagctcaggaagctctttacatatggagattggaaa 8019921  T

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Target: scaffold0257 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 17584 - 17489
Alignment:
Q  175 atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||| |||||| | || |||||||||||||||  |||||||||  ||| | || |  |||||||||||||||||||||| ||||||||||||||||    
T  17584 atcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaagctctttacatatggagattggaaa 17489  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 8693337 - 8693427
Alignment:
Q  180 cttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa 270  Q
    |||||| | |||||||||| || ||||  |||||||||  |||||| | ||| ||||||||||||||||| ||| ||||||||| ||||||    
T  8693337 cttcacttgcaaatatttcatccagctcatctgcttctcttatgatcagaacatttagctcaggaagctcgttacatatggagactggaaa 8693427  T

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