View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2523_low_1 (Length: 526)
Name: NF2523_low_1
Description: NF2523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2523_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 37319551 - 37319845
Alignment:
| Q |
13 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacctcattacagaaatctatga |
112 |
Q |
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| T |
37319551 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatga |
37319650 |
T |
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| Q |
113 |
aattctaaaaatagctatcctgattgatcaataatatgaatacagttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
212 |
Q |
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| T |
37319651 |
aattctaaaaatagcaatgctgattgatcaataatatgaatacggttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
37319750 |
T |
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| Q |
213 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataatttttctaaaacacaccttgctgctcacttggactagtgtgttctagacagtg |
307 |
Q |
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| T |
37319751 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataaattttctaaaacaaacctagttgctcacttggactagtgtgttctagacagtg |
37319845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 307 - 434
Target Start/End: Original strand, 37319983 - 37320110
Alignment:
| Q |
307 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcggtgtctcctttccctttcctttaccaaccacaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37319983 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
37320082 |
T |
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| Q |
407 |
agtctatgacattaacaaacaaaaacat |
434 |
Q |
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| T |
37320083 |
agtctatgacattaacaaacaaaaacat |
37320110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 427 - 526
Target Start/End: Original strand, 37320171 - 37320266
Alignment:
| Q |
427 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaattaattacctcgtcgagagaatgataatcatcagcaatccttgaatatc |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320171 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatc----ttaattacctcgtcgagagaatgataatcatcagcaatccttgaatatc |
37320266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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