View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2523_low_2 (Length: 300)

Name: NF2523_low_2
Description: NF2523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2523_low_2
NF2523_low_2
[»] chr2 (4 HSPs)
chr2 (1-260)||(32635907-32636161)
chr2 (1-89)||(45340793-45340881)
chr2 (178-247)||(45340586-45340654)
chr2 (157-229)||(38701842-38701914)
[»] chr6 (3 HSPs)
chr6 (157-260)||(6346815-6346918)
chr6 (3-86)||(7913172-7913255)
chr6 (157-243)||(2567498-2567584)
[»] chr8 (1 HSPs)
chr8 (2-90)||(29386703-29386791)
[»] scaffold0554 (1 HSPs)
scaffold0554 (157-239)||(7350-7432)
[»] chr7 (2 HSPs)
chr7 (157-243)||(24731712-24731798)
chr7 (175-243)||(7711332-7711400)
[»] chr5 (2 HSPs)
chr5 (157-243)||(30655133-30655219)
chr5 (187-260)||(15160427-15160500)
[»] chr3 (1 HSPs)
chr3 (157-243)||(36084541-36084627)
[»] chr4 (1 HSPs)
chr4 (178-260)||(2549300-2549382)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 32636161 - 32635907
Alignment:
Q  1 tgtatttgttattttcatcatcggtcaattttagctgatt-gcaatcttagaaatcaaatatcttaatgttttagttattgatctacactagttattctc 99  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||| ||| ||| || ||||||||||||||| |||||||||||||  |||||| |    
T  32636161 tgtatttgttattttcatcatcagtaaattttagctgatttgcaatctttgaagtcacatgtcttaatgttttagtgattgatctacactttttattcac 32636062  T
Q  100 tatttagaaatatttatgcaagcagaattagctccaaattagctacgaatcatatatcattttttaaatgttactagaaatactctcaagtgtttctaaa 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||      |||||    
T  32636061 tatttagaaatatttatgcaagcagaattagctacaaattagctactaaacatatatcattttttaaatgttattagaaatactctcaa------ctaaa 32635968  T
Q  200 accatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 260  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  32635967 accatttagcaacataggttttacctaacacttatcaaatattactaaatttaaatagtaa 32635907  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 45340881 - 45340793
Alignment:
Q  1 tgtatttgttattttcatcatcggtcaattttagctgattgcaatcttagaaatcaaatatcttaatgttttagttattgatctacact 89  Q
    |||||||||||||||||| | |  | ||||||||||  ||| |||||| ||||||| |||||||||||||| ||| |||||||||||||    
T  45340881 tgtatttgttattttcattaccaattaattttagcttgttggaatctttgaaatcacatatcttaatgtttaagtgattgatctacact 45340793  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 45340654 - 45340586
Alignment:
Q  178 aatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaa 247  Q
    |||||| ||||||||| |||||||||||||| | |||||||||| ||||||| || ||||||||||||||    
T  45340654 aatactatcaagtgttactaaaaccatttagaagcataggttttgcctaaca-ttttcaaatgttattaa 45340586  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 38701842 - 38701914
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaaca 229  Q
    ||||||||| || ||||||| |||||||||||| ||| |||||  ||||||| ||||  ||||||||| ||||    
T  38701842 cattttttatatattactagtaatactctcaagggttactaaagtcatttagtaacaccggttttaccaaaca 38701914  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 6346815 - 6346918
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaata 256  Q
    |||||||||  ||||||  | ||||| |||||||||| || ||| ||||||| |||||||| ||||||||||| |||||||||||||  || ||||||||    
T  6346815 cattttttaggtgttacatgtaataccctcaagtgttacttaaatcatttagtaacataggctttacctaacatttatcaaatgttacaaaatttaaata 6346914  T
Q  257 gtaa 260  Q
    ||||    
T  6346915 gtaa 6346918  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 7913172 - 7913255
Alignment:
Q  3 tatttgttattttcatcatcggtcaattttagctgattgcaatcttagaaatcaaatatcttaatgttttagttattgatctac 86  Q
    |||||||| ||||||| |||  ||||||||||||  ||| |||||| |||||||||||| | ||||||||| | ||||||||||    
T  7913172 tatttgttcttttcattatcaatcaattttagcttgttgaaatctttgaaatcaaatatataaatgttttactgattgatctac 7913255  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 2567584 - 2567498
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 243  Q
    ||||||| ||||| |||||  || ||||||||| ||| |||||||||||||| ||||  |  |||||| |||| |||||||||||||    
T  2567584 catttttaaaatgatactaagaagactctcaagggttactaaaaccatttagtaacacggactttaccaaacatttatcaaatgtta 2567498  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 29386791 - 29386703
Alignment:
Q  2 gtatttgttattttcatcatcggtcaattttagctgattgcaatcttagaaatcaaatatcttaatgttttagttattgatctacacta 90  Q
    |||||||||||||| || |||  ||||||||| ||  ||| |||||| |||||||||||||||||||||||| | |||||| |||||||    
T  29386791 gtatttgttattttaattatcaatcaattttaccttgttgaaatctttgaaatcaaatatcttaatgttttactgattgatatacacta 29386703  T

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Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 7432 - 7350
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaat 239  Q
    |||||||||||||||||||  || ||||| |||  || |||||||||||||| ||||| || ||||||||||| |||||||||    
T  7432 cattttttaaatgttactaataagactcttaaggattactaaaaccatttagtaacattggctttacctaacatttatcaaat 7350  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 24731712 - 24731798
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 243  Q
    ||||||||||   |||| || ||||||| |||||||| || ||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  24731712 cattttttaagccttacaaggaatactcacaagtgttactgaaatcatttagtaacatgggttttacctaacatttatcaaatgtta 24731798  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 7711332 - 7711400
Alignment:
Q  175 agaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 243  Q
    ||||||||||||||||||| || ||| ||||||| ||||  || ||||||||||| | |||||||||||    
T  7711332 agaaatactctcaagtgttactgaaatcatttagtaacacgggctttacctaacattcatcaaatgtta 7711400  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 30655133 - 30655219
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 243  Q
    |||||||||| |||||| || |||||| ||||||||| || ||| ||||||| ||||  || ||||||||||| |||||||||||||    
T  30655133 cattttttaagtgttacaagtaatactttcaagtgttactgaaatcatttagtaacaccggctttacctaacatttatcaaatgtta 30655219  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 15160500 - 15160427
Alignment:
Q  187 aagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 260  Q
    ||||||| || ||| ||||||| ||||| || ||||||||||| |||||||||||||  |  ||||||||||||    
T  15160500 aagtgttactgaaatcatttagtaacatgggctttacctaacatttatcaaatgttacaagatttaaatagtaa 15160427  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 36084627 - 36084541
Alignment:
Q  157 cattttttaaatgttactagaaatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 243  Q
    |||||||||| |||||| ||  ||||||| ||||||| || ||| ||||||| |||||||| ||||||||||| || ||||||||||    
T  36084627 cattttttaagtgttacaagtgatactctaaagtgttactgaaatcatttagtaacataggctttacctaacatttgtcaaatgtta 36084541  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 2549382 - 2549300
Alignment:
Q  178 aatactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 260  Q
    |||||||||||||||| || ||| ||||||| ||||  |||||||||||||| || |||||| |||  |  ||||||||||||    
T  2549382 aatactctcaagtgttactgaaatcatttagtaacacgggttttacctaacatttgtcaaatattacaagatttaaatagtaa 2549300  T

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