View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2523_low_3 (Length: 272)
Name: NF2523_low_3
Description: NF2523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2523_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 11103976 - 11103715
Alignment:
| Q |
1 |
ttataattgttcttagagtctctggcccaataattaaaatcatgtcttaggatccaataagttaacgttgggagttaaaaatgctataatgcattgacta |
100 |
Q |
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| T |
11103976 |
ttataattgttcttagagtctgtggcccaataattaaaatcatgtcttaggatccaataagttaacgttgggagttaaaaatgctataatgcattgacta |
11103877 |
T |
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| Q |
101 |
aa-tcatatttaaatctaaattttatttgaagtgtatcggtatagttgattattgaattccactgaaaatcttatagacgacatgagagcattcattttt |
199 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11103876 |
aaatcatatttaaatctttattttatttgaagtgtatcggtatagttgattattgaattccactgaaaatcttatagacgacataagagcattcattttt |
11103777 |
T |
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| Q |
200 |
tccttgcaaacatgattaggcttcttttataatagacgaattaaggaatcgatcgaacctat |
261 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
11103776 |
tccttgcaaacatgattaggcttcttttatcatagacgaattaaggaatagatcgaacctat |
11103715 |
T |
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