View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_13 (Length: 337)
Name: NF2524_high_13
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 13202466 - 13202772
Alignment:
| Q |
21 |
ttcttagatttagttctaaatttcagtccccggttgtaattcgacagaaatataacagttttagatttagaggtctctgcatcagccacattttaccgca |
120 |
Q |
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| T |
13202466 |
ttcttagatttagttctaaatttcagtccccggttgtaattcgacagaaatataacagctttagatttagaggtctctgcatcagccacattttaccgca |
13202565 |
T |
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| Q |
121 |
gtataaaggttcgcagcataatcacaaatgcgatcccagttaaaactatgggaaaataaaagcagaaacaaaggcatttacccagtcatgagttcctcga |
220 |
Q |
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| T |
13202566 |
gtataaaggttcgcagcataatcacaaatgcgatcccatttaaaactatgggaaaataaaagcagaaacaaaggcatttacccagtcatgagctcctcga |
13202665 |
T |
|
| Q |
221 |
gcttccttcagcccatatgttaggcccgagtatattcctgcagccactcctacaatgcaaaagaatctataaggctcatgtgtctacaaaaggaaatttt |
320 |
Q |
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| T |
13202666 |
gcttccttcagcccatatgttaggccggagtatattcctgcagccactcctgcaatgcaaaagaatctataaggctcatgtgtctacaaaaggaaatttt |
13202765 |
T |
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| Q |
321 |
acctttg |
327 |
Q |
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| T |
13202766 |
acctttg |
13202772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 50326097 - 50326029
Alignment:
| Q |
198 |
ttacccagtcatgagttcctcgagcttccttcagcccatatgttaggcccgagtatattcctgcagcca |
266 |
Q |
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| T |
50326097 |
ttacccagtcatgagtaccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagcca |
50326029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 10418181 - 10418229
Alignment:
| Q |
83 |
agatttagaggtctctgcatcagccacattttaccgcagtataaaggtt |
131 |
Q |
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| T |
10418181 |
agattttgaggtctctgcatcggccacatttggcctcagtataaaggtt |
10418229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 11358274 - 11358234
Alignment:
| Q |
101 |
atcagccacattttaccgcagtataaaggttcgcagcataa |
141 |
Q |
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| T |
11358274 |
atcagccacatttttccgcaatataaaggctcgcagcataa |
11358234 |
T |
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