View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_17 (Length: 308)
Name: NF2524_high_17
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 33312333 - 33312227
Alignment:
| Q |
103 |
tatatcaaacaagtagcagtacgactctacgcgtcacatattggcgaaatatatattattagagtaactaattgcaaaatatactaattgatcaagttaa |
202 |
Q |
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| T |
33312333 |
tatatcaaacaagtagcagtacgactctacgcgtcacatattggcgaaatatatattattagagtaactaattacaaaatatactaattgatcaagttaa |
33312234 |
T |
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| Q |
203 |
aatatat |
209 |
Q |
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||||||| |
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| T |
33312233 |
aatatat |
33312227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 33312714 - 33312621
Alignment:
| Q |
18 |
atgaatattatttagctgcaagttaatacattaattatttctttccccccttgtggctaatgattttattttccttgtagatatatatatcaaa |
111 |
Q |
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| T |
33312714 |
atgaatattatttagctgcaagttaatacattaattatttctttccccccttgtggctaatgattttattttccttgtagatacatatatcaaa |
33312621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 29113188 - 29113262
Alignment:
| Q |
23 |
tattatttagctgcaagttaatacattaattatttctttcccccc--ttgtggctaatgattttattttccttgt |
95 |
Q |
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| T |
29113188 |
tattatttagctgcaatttaatacattaattatttcattcccctctgttgtggctaatgatttctttttccttgt |
29113262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 33312219 - 33312177
Alignment:
| Q |
255 |
gttagccaaagctaactcattgacatgcatagctacgcctttg |
297 |
Q |
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| T |
33312219 |
gttagccaaagctacctcattgacatgcatagctacgcctttg |
33312177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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