View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_high_23 (Length: 268)

Name: NF2524_high_23
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_high_23
NF2524_high_23
[»] chr6 (3 HSPs)
chr6 (1-268)||(31108952-31109215)
chr6 (179-268)||(33242510-33242595)
chr6 (177-268)||(27441649-27441736)
[»] chr3 (7 HSPs)
chr3 (177-268)||(10457798-10457885)
chr3 (176-265)||(4190170-4190255)
chr3 (206-268)||(34791936-34791994)
chr3 (203-268)||(9434231-9434292)
chr3 (230-268)||(25996375-25996413)
chr3 (173-268)||(51757700-51757790)
chr3 (174-248)||(19148895-19148965)
[»] chr2 (15 HSPs)
chr2 (175-268)||(34895645-34895734)
chr2 (169-265)||(18491815-18491907)
chr2 (173-268)||(41281876-41281967)
chr2 (203-268)||(11825586-11825647)
chr2 (175-268)||(12531567-12531656)
chr2 (172-268)||(43114664-43114756)
chr2 (203-268)||(4299352-4299413)
chr2 (175-263)||(6518398-6518482)
chr2 (203-266)||(966766-966825)
chr2 (179-259)||(16804084-16804160)
chr2 (179-259)||(16843366-16843442)
chr2 (201-268)||(4451880-4451943)
chr2 (197-268)||(14285783-14285850)
chr2 (203-268)||(12415392-12415453)
chr2 (203-268)||(12427452-12427513)
[»] chr1 (11 HSPs)
chr1 (173-268)||(35003401-35003492)
chr1 (203-268)||(45705932-45705993)
chr1 (176-268)||(26585569-26585657)
chr1 (176-268)||(38336025-38336113)
chr1 (205-268)||(48119735-48119794)
chr1 (179-268)||(35000021-35000106)
chr1 (197-266)||(41065260-41065325)
chr1 (179-268)||(45639640-45639725)
chr1 (178-268)||(45427652-45427738)
chr1 (203-268)||(38113127-38113188)
chr1 (203-268)||(44112784-44112845)
[»] chr7 (5 HSPs)
chr7 (175-268)||(31513394-31513483)
chr7 (178-268)||(40237026-40237112)
chr7 (175-268)||(31408537-31408626)
chr7 (175-268)||(33384978-33385067)
chr7 (177-268)||(27535137-27535224)
[»] chr4 (10 HSPs)
chr4 (179-268)||(55272284-55272369)
chr4 (178-265)||(19880064-19880147)
chr4 (203-268)||(35037112-35037173)
chr4 (197-265)||(960796-960860)
chr4 (206-268)||(17619087-17619145)
chr4 (203-268)||(712067-712128)
chr4 (203-268)||(38851620-38851681)
chr4 (179-268)||(48435487-48435572)
chr4 (172-266)||(46827607-46827697)
chr4 (176-225)||(32728503-32728552)
[»] chr5 (3 HSPs)
chr5 (197-268)||(17208181-17208248)
chr5 (179-268)||(30622627-30622712)
chr5 (203-268)||(32473326-32473387)
[»] chr8 (4 HSPs)
chr8 (179-268)||(10678060-10678145)
chr8 (203-268)||(35181623-35181684)
chr8 (177-268)||(34304895-34304981)
chr8 (230-268)||(19386520-19386558)
[»] scaffold0003 (1 HSPs)
scaffold0003 (177-268)||(45625-45712)
[»] scaffold0100 (1 HSPs)
scaffold0100 (197-268)||(35382-35449)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 31108952 - 31109215
Alignment:
Q  1 actatcatttgctctttgttttcatatgaatatattacaatgtcattaaattggatgttcaaaatcatagattggtcaatgtaatttgcgcaattgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31108952 actatcatttgctctttgttttcatatgaatatattacaatgttattaaattggatgttcaaaatcatagattggtcaatgtcatttgcgcaattgaaaa 31109051  T
Q  101 taaggagatcaaaactgtggttttgttcnnnnnnnnnnggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgtaccc 200  Q
    ||||||||||||||||| |||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31109052 taaggagatcaaaactgcggttttgtccaaaaaaaaaaggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgcaccc 31109151  T
Q  201 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||    
T  31109152 ctatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaagagggagag 31109215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 33242595 - 33242510
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  33242595 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 33242510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 27441736 - 27441649
Alignment:
Q  177 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||    
T  27441736 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagag 27441649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 10457798 - 10457885
Alignment:
Q  177 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||| |||||| |||||  ||||||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||    
T  10457798 aagagtgttgatacatgtataccctcatgtggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagag 10457885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 4190170 - 4190255
Alignment:
Q  176 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagaggga 265  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||||||||||    |||||||||||||||||||| ||||||||| |||||    
T  4190170 aaagagtggtgatacatgtatacccttatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggga 4190255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 34791994 - 34791936
Alignment:
Q  206 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||    
T  34791994 tggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagag 34791936  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 9434292 - 9434231
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||    
T  9434292 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagag 9434231  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 25996413 - 25996375
Alignment:
Q  230 ccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  25996413 ccacacaaaatcctgacatgtggcaaggaaaagggagag 25996375  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 51757790 - 51757700
Alignment:
Q  173 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||||| ||| ||||||  ||||| ||||||||||| |||||||||||    ||||||| |||||||||||| ||||||||| ||| ||||    
T  51757790 aaaaatgagtggtgatacatgtacacccc-atgtggcaatatacctcttacac----ccacacacaatcctgacatgtggcaaggaaaaggaagag 51757700  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 19148965 - 19148895
Alignment:
Q  174 aaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacat 248  Q
    ||||||| || ||||||||||  ||||| ||||||||||||||| |||||||    ||||||||||| |||||||    
T  19148965 aaaaagaatggtgacacatgtacacccccatgtggcaatacaccacttacac----ccacacaaaattctgacat 19148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 34895645 - 34895734
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  34895645 aaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 34895734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 18491907 - 18491815
Alignment:
Q  169 atataaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagaggga 265  Q
    ||||||||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| |||||    
T  18491907 atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaaggga 18491815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 41281876 - 41281967
Alignment:
Q  173 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||| ||| ||||||  ||||| || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||    
T  41281876 aaaaaagagtggtgatacatgtacacccccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagag 41281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 11825586 - 11825647
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  11825586 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 11825647  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 12531567 - 12531656
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||| ||| ||||||  ||| | || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  12531567 aaaagagtgatgatacatgtacacctccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 12531656  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 43114756 - 43114664
Alignment:
Q  172 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||| ||||| ||| ||||||  ||||  |||||||||||||||||||||||    |||||||||||||||||| | ||||||||| ||||||||    
T  43114756 taaaaatgagtggtgatacatgtacaccctcatgtggcaatacacctcttacac----ccacacaaaatcctgacaagtggcaaggaaaagggagag 43114664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 4299352 - 4299413
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  4299352 atgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 4299413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 6518398 - 6518482
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagg 263  Q
    ||||||||| ||| ||||||  ||| | ||||| |||||||||| ||||||    |||||||||||||||||||| |||||||||||||    
T  6518398 aaaagagtggtgatacatgtacacctccatgtgtcaatacaccttttacac----ccacacaaaatcctgacatgtggcaaggaagagg 6518482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 966766 - 966825
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggag 266  Q
    |||||| ||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||    
T  966766 atgtggaaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggag 966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 16804160 - 16804084
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaa 259  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| |||||||||    
T  16804160 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaa 16804084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 16843442 - 16843366
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaa 259  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| |||||||||    
T  16843442 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaa 16843366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 4451880 - 4451943
Alignment:
Q  201 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||| || ||||||||    |||||||||||||||||||| || |||||| ||||||||    
T  4451880 ctatgtggcaatatacttcttacac----ccacacaaaatcctgacatgtgggaaggaaaagggagag 4451943  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 14285850 - 14285783
Alignment:
Q  197 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||| |||||||||||||||||    ||||| |||||||| ||||| || |||||| ||||||||    
T  14285850 acccctatgtgacaatacacctcttacac----ccacataaaatcctcacatgtggtaaggaaaagggagag 14285783  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 12415392 - 12415453
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||    
T  12415392 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagag 12415453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 12427452 - 12427513
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||    
T  12427452 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagag 12427513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 35003492 - 35003401
Alignment:
Q  173 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||| ||| |||||   ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  35003492 aaaaaagagtggtgatacatgcacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 35003401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 45705993 - 45705932
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  45705993 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 45705932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 26585657 - 26585569
Alignment:
Q  176 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||| ||| ||||||  ||||| ||| ||||||||| ||||||||    ||||||||||||||||||||| ||||||||| ||||||||    
T  26585657 aaagagtggtgatacatgtacacccccatgcggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagag 26585569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 38336113 - 38336025
Alignment:
Q  176 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||| ||| || |||  |||||||||||||||||||||||||| |    | ||||||||||||||||||| ||||||||| ||||||||    
T  38336113 aaagagtggtgatacttgtacacccctatgtggcaatacacctcttata----ttcacacaaaatcctgacatgtggcaaggaaaagggagag 38336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 48119794 - 48119735
Alignment:
Q  205 gtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  48119794 gtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 48119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 35000021 - 35000106
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| ||||||||||||| ||||||||| |||    |||||||||||||||| ||||||||| ||||||||    
T  35000021 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccat----acaaaatcctgacatgtggcaaggaaaagggagag 35000106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 41065325 - 41065260
Alignment:
Q  197 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggag 266  Q
    ||||| ||||||||||||||||||||||    ||| ||||||||||||||||| ||||||||| ||||||    
T  41065325 acccccatgtggcaatacacctcttaca----tccgcacaaaatcctgacatgtggcaaggaaaagggag 41065260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 45639640 - 45639725
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  |||||  ||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| ||||||||    
T  45639640 gagtggtgatacatgtacacccccttgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaagggagag 45639725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 45427652 - 45427738
Alignment:
Q  178 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||| ||| ||||||  | ||| |||||||||||||||||||     ||||||||||||||||||||||| || |||||| ||||||||    
T  45427652 agagtggtgatacatgtacatccccatgtggcaatacacctctt----ccatccacacaaaatcctgacatgtggtaaggaaaagggagag 45427738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 38113127 - 38113188
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| |||||||||||||||||    |||||||||||||||||||| ||||| ||| ||||||||    
T  38113127 atgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaagaaaagggagag 38113188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 44112845 - 44112784
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||    
T  44112845 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagag 44112784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 31513483 - 31513394
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||| ||| ||||||  |||| |||||||||||||||||||||||    || |||||||||||||||||| ||||||||| ||||||||    
T  31513483 aaaagagtggtgatacatgtacacccttatgtggcaatacacctcttaca----tctacacaaaatcctgacatgtggcaaggaaaagggagag 31513394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 40237112 - 40237026
Alignment:
Q  178 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||    
T  40237112 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagag 40237026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 31408537 - 31408626
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||| ||| ||||||  ||||| ||||| |||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||    
T  31408537 aaaagagtggtgatacatgtacacccccatgtgacaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagag 31408626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 33385067 - 33384978
Alignment:
Q  175 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||| ||| ||||||  ||||| ||||| |||||||||||||||||    ||| |||||||||||| ||| ||||||||| ||||||||    
T  33385067 aaaagagtggtgatacatgtaaacccccatgtgacaatacacctcttacac----ccatacaaaatcctgatatgtggcaaggaaaagggagag 33384978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 27535137 - 27535224
Alignment:
Q  177 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||| ||| |||||| | || | ||||||||||||| ||||||||    |||||||||||| |||||||| ||||||||| | ||||||    
T  27535137 aagagtggtgatacatgtattcctccatgtggcaatacatctcttaca----tccacacaaaattctgacatgtggcaaggaaaaaggagag 27535224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 55272284 - 55272369
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  55272284 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 55272369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 19880147 - 19880064
Alignment:
Q  178 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagaggga 265  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| |||||    
T  19880147 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggga 19880064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 35037173 - 35037112
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  35037173 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 35037112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 960796 - 960860
Alignment:
Q  197 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagaggga 265  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||| ||||||||| |||||    
T  960796 acccctatgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggga 960860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 17619087 - 17619145
Alignment:
Q  206 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  17619087 tggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 17619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 712128 - 712067
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||| ||||    
T  712128 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggaagag 712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 38851681 - 38851620
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||||| ||||||||    ||||||||||||||||||||| ||||||||| ||||||||    
T  38851681 atgtggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagag 38851620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 48435487 - 48435572
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| ||||| ||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  48435487 gagtggtgatacatgtacacccccatgtgacaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 48435572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 46827607 - 46827697
Alignment:
Q  172 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggag 266  Q
    |||||||||||| ||| ||||||  ||| | |||||| |||||| |||||||||    |||||||||||||||||||| |||||| || ||||||    
T  46827607 taaaaaagagtggtgatacatgtacacctccatgtggaaatacatctcttacac----ccacacaaaatcctgacatgtggcaagaaaaagggag 46827697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 32728552 - 32728503
Alignment:
Q  176 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac 225  Q
    |||||||| ||| ||||||  ||||| |||||||||||||||||||||||    
T  32728552 aaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac 32728503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 17208248 - 17208181
Alignment:
Q  197 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||||||| ||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||    
T  17208248 acccctatgtgacaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagag 17208181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 30622627 - 30622712
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||  ||||||| ||||||||| || |||||    
T  30622627 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaattttgacatgtggcaaggaaaagagagag 30622712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 32473326 - 32473387
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||| ||| ||||||||    
T  32473326 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaagaaaagggagag 32473387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 10678060 - 10678145
Alignment:
Q  179 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| ||| ||||||  ||||| ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||    
T  10678060 gagtggtgatacatgtacacccccatgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagag 10678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 35181684 - 35181623
Alignment:
Q  203 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||    
T  35181684 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagag 35181623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 34304981 - 34304895
Alignment:
Q  177 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||| ||| ||||||  ||||| |||||||||||||||||||||||    ||| |||||||||||||||| ||||||||| || |||||    
T  34304981 aagagtggtgatacatgtacacccc-atgtggcaatacacctcttacac----ccaaacaaaatcctgacatgtggcaaggaaaagtgagag 34304895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 19386520 - 19386558
Alignment:
Q  230 ccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  19386520 ccacacaaaatcctgacatgtggcaaggaaaagggagag 19386558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 45625 - 45712
Alignment:
Q  177 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||    
T  45625 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagag 45712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 35382 - 35449
Alignment:
Q  197 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 268  Q
    ||||| |||||||||||||||||||||||    ||| ||||||||| |||||| ||||||||| ||||||||    
T  35382 acccccatgtggcaatacacctcttacac----ccatacaaaatccagacatgcggcaaggaaaagggagag 35449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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