View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2524_high_24 (Length: 267)
Name: NF2524_high_24
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 50062020 - 50062256
Alignment:
| Q |
18 |
aatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttgannnnnnnnnnnnattctggttcttattcgcagaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50062020 |
aatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttgattttttctttttattctggttcttattcgcagaacc |
50062119 |
T |
|
| Q |
118 |
aatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50062120 |
aatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttccc |
50062219 |
T |
|
| Q |
218 |
tgattaccatggcttcgaatgatatttgatctctgct |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50062220 |
tgattaccatggcttcgaatgatatttgatctctgct |
50062256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 44141442 - 44141679
Alignment:
| Q |
18 |
aatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttgannnnnnnnnnnn-attctggttcttattcgcagaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44141442 |
aatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttgatttttttctttttattctggttcttattcgcagaac |
44141541 |
T |
|
| Q |
117 |
caatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141542 |
caatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagccagtttcc |
44141641 |
T |
|
| Q |
217 |
ctgattaccatggcttcgaatgatatttgatctctgct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141642 |
ctgattaccatggcttcgaatgatatttgatctctgct |
44141679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University