View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2524_high_28 (Length: 253)
Name: NF2524_high_28
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2524_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 12880097 - 12880333
Alignment:
| Q |
2 |
gaaatttttctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttga |
101 |
Q |
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| T |
12880097 |
gaaatttttctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttga |
12880196 |
T |
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| Q |
102 |
actagctcaaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagttt |
201 |
Q |
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| T |
12880197 |
actagctcaaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagttt |
12880296 |
T |
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| Q |
202 |
gacaattataatgcaagttgcttagatttaagtttct |
238 |
Q |
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| T |
12880297 |
gacaattataatgcaagttgcttagatttaagtttct |
12880333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 11798347 - 11798121
Alignment:
| Q |
6 |
tttttctctctgatattactattagaatcttcatgaaaatcatgaaatgaggtattttctgaccctttactttggactaagttcgatctatcttgaacta |
105 |
Q |
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| T |
11798347 |
tttttttctttgatattactattgaaatcttcatgaaaatcatggaatgagattttttgtgactctttactttgggctaagttccatctatatcgaatta |
11798248 |
T |
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| Q |
106 |
gctcaaatgattttaaagtacagaggttttgaaggattatacaaattctataagtaatttattaaccaaattcttgaagtatgatgtaattagtttgaca |
205 |
Q |
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| T |
11798247 |
ggtcaaatgattttaaagtatagagg-cttgaaggattttacaaattctagaagtggaatattgaccaaa-tatgaaagtatgctctaattagtttgata |
11798150 |
T |
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| Q |
206 |
attataatgcaagttgcttagatttaagt |
234 |
Q |
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| T |
11798149 |
attataatgcaagttgcttagatttaagt |
11798121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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