View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2524_high_29 (Length: 252)

Name: NF2524_high_29
Description: NF2524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2524_high_29
NF2524_high_29
[»] chr1 (1 HSPs)
chr1 (118-244)||(47192365-47192491)
[»] chr8 (8 HSPs)
chr8 (118-244)||(1668705-1668831)
chr8 (118-244)||(16659499-16659625)
chr8 (118-244)||(38520619-38520745)
chr8 (118-244)||(22015513-22015639)
chr8 (19-64)||(1668885-1668930)
chr8 (19-64)||(16659679-16659724)
chr8 (19-64)||(38520520-38520565)
chr8 (22-64)||(22015693-22015735)
[»] chr4 (6 HSPs)
chr4 (118-244)||(23217613-23217739)
chr4 (118-244)||(45153398-45153524)
chr4 (118-244)||(45144618-45144744)
chr4 (19-64)||(23217514-23217559)
chr4 (19-64)||(45144798-45144843)
chr4 (19-64)||(45153578-45153623)
[»] chr3 (4 HSPs)
chr3 (118-244)||(2338209-2338335)
chr3 (118-244)||(21239767-21239893)
chr3 (19-64)||(2338110-2338155)
chr3 (19-64)||(21239947-21239992)
[»] chr5 (2 HSPs)
chr5 (118-244)||(3174843-3174969)
chr5 (19-64)||(3175023-3175068)
[»] chr2 (4 HSPs)
chr2 (118-244)||(3934686-3934812)
chr2 (118-244)||(38975059-38975185)
chr2 (19-64)||(3934588-3934632)
chr2 (19-56)||(38974966-38975003)
[»] scaffold0393 (2 HSPs)
scaffold0393 (118-207)||(10948-11037)
scaffold0393 (19-64)||(10849-10894)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 47192491 - 47192365
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  47192491 tggcagcaaggcccggacaggtccaaatactaaaccatgatctctcctatggctcttgctctatctagttgtcaaactcaaagttcttttctaaggtttt 47192392  T
Q  218 acttgatcataaataactattcttctc 244  Q
    |||||||||||||||||||||||||||    
T  47192391 acttgatcataaataactattcttctc 47192365  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 1668831 - 1668705
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  1668831 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 1668732  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  1668731 attttatcataaataactcttcttctc 1668705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 16659625 - 16659499
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  16659625 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 16659526  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  16659525 attttatcataaataactcttcttctc 16659499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 38520619 - 38520745
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  38520619 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 38520718  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  38520719 attttatcataaataactcttcttctc 38520745  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 22015639 - 22015513
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||     
T  22015639 tggcagtaaggcacagacagctccgaatactaaactatgatctctcctatggctcttgctctagctagttgtgaaactcaaagttcttttctaaggtttc 22015540  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  22015539 attttatcatgaataactcttcttctc 22015513  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 1668930 - 1668885
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  1668930 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 1668885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 16659724 - 16659679
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  16659724 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 16659679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38520520 - 38520565
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  38520520 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 38520565  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 22015735 - 22015693
Alignment:
Q  22 ccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22015735 ccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 22015693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 23217613 - 23217739
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  23217613 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 23217712  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  23217713 attttatcataaataactcttcttctc 23217739  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 45153524 - 45153398
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  45153524 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45153425  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  45153424 attttatcataaataactcttcttctc 45153398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 45144744 - 45144618
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  45144744 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45144645  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  45144644 attttatcatgaataactcttcttctc 45144618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 23217514 - 23217559
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23217514 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 23217559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45144843 - 45144798
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  45144843 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 45144798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45153623 - 45153578
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  45153623 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 45153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 2338209 - 2338335
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  2338209 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 2338308  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  2338309 attttatcataaataactcttcttctc 2338335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 21239893 - 21239767
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  21239893 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttcaaaggtttc 21239794  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  21239793 attttatcataaataactcttcttctc 21239767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2338110 - 2338155
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  2338110 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 2338155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 21239992 - 21239947
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  21239992 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 21239947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 3174969 - 3174843
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  3174969 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3174870  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  3174869 attttatcatgaataactcttcttctc 3174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 3175068 - 3175023
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  3175068 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 3175023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 3934686 - 3934812
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  3934686 tggcagtaaggcacagacagctctgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3934785  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||||||||||| ||||||||    
T  3934786 attttatcataaataactcttcttctc 3934812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 38975059 - 38975185
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaagatttt 217  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  38975059 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctcaagctagttgtcaaactcaaagttcttttctaaggtttc 38975158  T
Q  218 acttgatcataaataactattcttctc 244  Q
    | || ||||| ||||||| ||||||||    
T  38975159 attttatcatgaataactcttcttctc 38975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3934588 - 3934632
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  3934588 caaccaccaaagacagaaaa-cagctgcaagcagcgctgatctgct 3934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 38974966 - 38975003
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgct 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38974966 caaccaccaaagacagaaaaacagctgcaagcagcgct 38975003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 10948 - 11037
Alignment:
Q  118 tggcagcaaggcccggacagctccaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttt 207  Q
    |||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10948 tggcagtaaggcacagacagctctaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttt 11037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10849 - 10894
Alignment:
Q  19 caaccaccaaagacagaaaaacagttgcaagcagcgctgatctgct 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  10849 caaccaccaaagacagaaaaacagctgcaagcagcgctgatctgct 10894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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